View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1617-INSERTION-9 (Length: 700)

Name: NF1617-INSERTION-9
Description: NF1617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1617-INSERTION-9
NF1617-INSERTION-9
[»] chr2 (1 HSPs)
chr2 (58-700)||(17471775-17472416)


Alignment Details
Target: chr2 (Bit Score: 547; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 58 - 700
Target Start/End: Complemental strand, 17472416 - 17471775
Alignment:
Q  58 tctctctcatctagtaggagtatataattaaggacccttgctcattcccttaatacatacatacactcactcttctttttacaacacatcatcatatatc 157  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17472416 tctctctcatctagtaggagtatataattaaagacccttgctcattcccttaatacatacatacactcactcttctttttacaacacatcatcatatatc 17472317  T
Q  158 tcatagtagtataatgatgtacttgagaagtgaattctccgaatattcaaacgaaatcagcaacaacactagcagtgagttatgctgcacaacagcacca 257  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  17472316 tcatagtagtataatgatgtacttgagaagtggattctctgaatattcaaacgaaatcagcaacaatactagcagtgagttatgctgcacaacagcacca 17472217  T
Q  258 aattcaaccattactccttcaaaagatatcatcacattcacacaaccactcaaccgtctctcagacaatctagcttcaatactagatgatgatacagggt 357  Q
    ||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||    
T  17472216 aattcaaccattactgcttcacaagatgtcatcacattcacacaaccactcaaccgtctctcagacaatctagcttcaatactaga---tgatacagggt 17472120  T
Q  358 ttgacttcttttccgacgcaaagatcatcgccaaagatggtcgagaagtttccgtgcaccggtgcattctgtcagcaaggagtagtttctttaaggatgt 457  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || || |||||||||||||||||||||||    
T  17472119 ttgacttcttttccgacgcaaagatcatcgccaaagatggtcgagaagtttccgtgcaccggtgcattttatcggcgaggagtagtttctttaaggatgt 17472020  T
Q  458 ttttaagggaaagaaagaaacgacgctgcaactgaaggaagttgctaaggattatgatgttgggtttgaagcgcttaacgttgttctgcgttatttgtat 557  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  17472019 gtttaagggaaagaaagaaacgacgctgcaactgaaggaagttgctaaggattatgatgttgggtttgacgcgcttaacgttgttctgcgttatttgtat 17471920  T
Q  558 agtgagagagttgaggatcatcatttgtctgct-aagatgtttgtgtttgtgtggatgatgattggttacactttggttgttggccagttgttgaattca 656  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  17471919 agtgagagagttgaggatcatcatttgtctgctaaagatgtttgtgtttgtgtggatgatgattgtttacactttggttgttggccagttgttgatttca 17471820  T
Q  657 tgcttcagcttctctatgcttcattcacctttc-aatttctgaat 700  Q
    ||||||| |||||||||||||| |||||||||| |||||||||||    
T  17471819 tgcttcaacttctctatgcttccttcacctttcaaatttctgaat 17471775  T

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