View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16170_high_1 (Length: 645)

Name: NF16170_high_1
Description: NF16170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16170_high_1
NF16170_high_1
[»] chr3 (17 HSPs)
chr3 (309-616)||(52952519-52952825)
chr3 (4-206)||(52952215-52952417)
chr3 (4-206)||(31923011-31923212)
chr3 (4-206)||(31672425-31672626)
chr3 (4-206)||(31905083-31905284)
chr3 (505-615)||(31673080-31673190)
chr3 (513-615)||(31922485-31922587)
chr3 (318-421)||(40272824-40272927)
chr3 (322-392)||(29106595-29106665)
chr3 (318-382)||(31904908-31904972)
chr3 (318-382)||(45948889-45948953)
chr3 (318-420)||(7943032-7943134)
chr3 (318-374)||(21875055-21875112)
chr3 (319-364)||(54374415-54374460)
chr3 (349-421)||(6411834-6411906)
chr3 (318-382)||(54032610-54032674)
chr3 (318-421)||(54484732-54484836)
[»] chr7 (8 HSPs)
chr7 (318-423)||(33871920-33872024)
chr7 (318-382)||(11617639-11617703)
chr7 (318-382)||(19426940-19427004)
chr7 (318-382)||(23419725-23419789)
chr7 (318-382)||(7879658-7879722)
chr7 (318-368)||(46354214-46354264)
chr7 (318-382)||(14099057-14099121)
chr7 (318-382)||(14409074-14409138)
[»] chr2 (6 HSPs)
chr2 (318-423)||(19977724-19977829)
chr2 (320-423)||(32781299-32781401)
chr2 (338-421)||(26684632-26684715)
chr2 (318-421)||(11514456-11514558)
chr2 (318-382)||(5450305-5450370)
chr2 (318-382)||(8455367-8455431)
[»] scaffold0057 (2 HSPs)
scaffold0057 (316-421)||(46849-46954)
scaffold0057 (323-419)||(24786-24882)
[»] chr4 (13 HSPs)
chr4 (318-421)||(19027868-19027971)
chr4 (318-382)||(9987885-9987949)
chr4 (318-368)||(10660424-10660474)
chr4 (318-368)||(10874569-10874619)
chr4 (318-368)||(16408668-16408718)
chr4 (322-379)||(10379997-10380053)
chr4 (321-382)||(14983857-14983918)
chr4 (322-379)||(51865092-51865149)
chr4 (318-382)||(17043445-17043509)
chr4 (318-421)||(20639670-20639774)
chr4 (318-382)||(25629069-25629133)
chr4 (318-382)||(41018845-41018908)
chr4 (318-382)||(47443977-47444041)
[»] chr5 (5 HSPs)
chr5 (318-368)||(22187305-22187355)
chr5 (318-382)||(1405207-1405271)
chr5 (318-382)||(24448910-24448974)
chr5 (318-368)||(12006395-12006445)
chr5 (316-368)||(29334413-29334465)
[»] chr1 (9 HSPs)
chr1 (319-419)||(43207539-43207640)
chr1 (322-382)||(10163806-10163866)
chr1 (319-382)||(46248004-46248067)
chr1 (319-419)||(23768334-23768434)
chr1 (318-423)||(32632567-32632671)
chr1 (318-386)||(25468310-25468378)
chr1 (318-382)||(31382265-31382328)
chr1 (318-382)||(44485160-44485224)
chr1 (318-382)||(46991847-46991911)
[»] chr8 (11 HSPs)
chr8 (319-382)||(44530170-44530233)
chr8 (318-382)||(8897815-8897879)
chr8 (318-382)||(36720816-36720880)
chr8 (318-382)||(12625909-12625974)
chr8 (318-419)||(28817640-28817741)
chr8 (318-423)||(29877114-29877219)
chr8 (318-419)||(36918144-36918245)
chr8 (318-382)||(5135340-5135404)
chr8 (318-382)||(8483989-8484053)
chr8 (328-368)||(16225049-16225089)
chr8 (318-378)||(17823596-17823656)
[»] chr6 (7 HSPs)
chr6 (319-382)||(20400688-20400751)
chr6 (319-378)||(32728211-32728270)
chr6 (318-382)||(3815128-3815192)
chr6 (101-153)||(10565602-10565654)
chr6 (321-368)||(6024256-6024303)
chr6 (335-372)||(24751135-24751172)
chr6 (322-382)||(1941879-1941939)
[»] scaffold0049 (1 HSPs)
scaffold0049 (318-419)||(58997-59100)
[»] scaffold0187 (2 HSPs)
scaffold0187 (349-382)||(10101-10134)
scaffold0187 (349-382)||(20429-20462)
[»] scaffold0194 (1 HSPs)
scaffold0194 (349-421)||(24699-24771)


Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 309 - 616
Target Start/End: Original strand, 52952519 - 52952825
Alignment:
Q  309 gtaccactgctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgaga 408  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||| | | |||||||||    
T  52952519 gtaccacggttggaaacaacctcttatgtaaaaaatatgataagactgtgtacaatacaccaaatagtgggacctcttttcaaactctttatatacgaga 52952618  T
Q  409 gctttagtgcaccagttacccctgatatttaaaattgtactactattacaatagtaattcaaagtctattcaacnnnnnnnngcctcggnnnnnnngtgt 508  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||       ||||    
T  52952619 gctttagtgcaccggtta-ccctgatatttaaaattgtactactattacaatagtaattcaaagtctattcaacttttttttgcctcggaaaaaaagtgt 52952717  T
Q  509 agtcaatttgagaaaacgtttcttgtatttattaaaagttgtttgaatttaatatccaggcagagtcagtcactcactgaactagaggcagagtcactat 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  52952718 agtcaatttgagaaaacgtttcttgtatttattaaaagttgtttgaatttaatatccaggcagagtcagtcactcactgaactagaggcagagtcgctat 52952817  T
Q  609 ggaatttc 616  Q
    ||||||||    
T  52952818 ggaatttc 52952825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 4 - 206
Target Start/End: Original strand, 52952215 - 52952417
Alignment:
Q  4 tcgaagaaaatcgaacattagatcttgatagttttggctctttgggttgttaggttgcccaaacacacaagacaatatagtgtcaaaataatggagtatc 103  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  52952215 tcgaagagaatcgaacattagatcttgatagttttggctctttggtttcttaggttgcccaaacacacaagacaatatagcgtcaaaataatggagtatc 52952314  T
Q  104 aatcgaaatggtacaagaggaagagagtgaataatttattgccacatcattaaaattacatattagtcaaagtttttaaaatggaggccaaaattgtgca 203  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  52952315 aatcgaaatggtacaagaggaagagagtgaataatttatcgtcacatcattaaaatcacatattagtcaaagtttttaaaatggaggccaaaattgtgca 52952414  T
Q  204 att 206  Q
    |||    
T  52952415 att 52952417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 4 - 206
Target Start/End: Complemental strand, 31923212 - 31923011
Alignment:
Q  4 tcgaagaaaatcgaacattagatcttgatagttttggctctttgggttgttaggttgcccaaacacacaagacaatatagtgtcaaaataatggagtatc 103  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  31923212 tcgaagagaatcgaacattagatcttgatagttttggctctttggtttcttaggttgctcaaacacacaagaca-tatagtgtcaaaataatggagtatc 31923114  T
Q  104 aatcgaaatggtacaagaggaagagagtgaataatttattgccacatcattaaaattacatattagtcaaagtttttaaaatggaggccaaaattgtgca 203  Q
    |||||||||||||||||| || || |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  31923113 aatcgaaatggtacaagaagacgatagtggataatttattgccacatcattaaaatcacatattagtcaaagtttttaaaatagaggccaaaattgtgca 31923014  T
Q  204 att 206  Q
    |||    
T  31923013 att 31923011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 4 - 206
Target Start/End: Original strand, 31672425 - 31672626
Alignment:
Q  4 tcgaagaaaatcgaacattagatcttgatagttttggctctttgggttgttaggttgcccaaacacacaagacaatatagtgtcaaaataatggagtatc 103  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||| ||||| |||||||||||||||||||    
T  31672425 tcgaagagaatcgaacattagatcttgatagttttggctctttggtttcttaggttgctcaaacacacaagaca-tatagcgtcaaaataatggagtatc 31672523  T
Q  104 aatcgaaatggtacaagaggaagagagtgaataatttattgccacatcattaaaattacatattagtcaaagtttttaaaatggaggccaaaattgtgca 203  Q
    |||||||||||||||||| || || |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  31672524 aatcgaaatggtacaagaagacgatagtggataatttattgccacatcattaaaatcacatattagtcaaagtttttaaaatagaggccaaaattgtgca 31672623  T
Q  204 att 206  Q
    |||    
T  31672624 att 31672626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 4 - 206
Target Start/End: Complemental strand, 31905284 - 31905083
Alignment:
Q  4 tcgaagaaaatcgaacattagatcttgatagttttggctctttgggttgttaggttgcccaaacacacaagacaatatagtgtcaaaataatggagtatc 103  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||| || ||||||||| ||| |||| |||||| ||||| |||||||||||||||||||    
T  31905284 tcgaagagaatcgaacattagatctcgatagttttggctctttggtttcttaggttgctcaaccacataagaca-tatagcgtcaaaataatggagtatc 31905186  T
Q  104 aatcgaaatggtacaagaggaagagagtgaataatttattgccacatcattaaaattacatattagtcaaagtttttaaaatggaggccaaaattgtgca 203  Q
    ||||||||||||| |||| || || |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  31905185 aatcgaaatggtataagaagacgatagtggataatttattgccacatcattaaaatcacatattagtcaaagtttttaaaatagaggccaaaattgtgca 31905086  T
Q  204 att 206  Q
    |||    
T  31905085 att 31905083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 505 - 615
Target Start/End: Original strand, 31673080 - 31673190
Alignment:
Q  505 gtgtagtcaatttgagaaaacgtttcttgtatttattaaaagttgtttgaatttaatatccaggcagagtcagtcactcactgaactagaggcagagtca 604  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||   |||||| ||||||||||||    
T  31673080 gtgtagtgaatttgagaaaacgtttcttatatttattaaaagttgtttgaatttaatatccaggcagagccagtcacttggtgaactggaggcagagtca 31673179  T
Q  605 ctatggaattt 615  Q
    |||||||||||    
T  31673180 ctatggaattt 31673190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 513 - 615
Target Start/End: Complemental strand, 31922587 - 31922485
Alignment:
Q  513 aatttgagaaaacgtttcttgtatttattaaaagttgtttgaatttaatatccaggcagagtcagtcactcactgaactagaggcagagtcactatggaa 612  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||| ||||    
T  31922587 aatttgagaaaacgtttcttatatttattaaaagttgtttgaatttaatatccaggcagagccagtcactcggtgaactagaggcagagtcactacggaa 31922488  T
Q  613 ttt 615  Q
    |||    
T  31922487 ttt 31922485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 318 - 421
Target Start/End: Complemental strand, 40272927 - 40272824
Alignment:
Q  318 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgagagctttagtg 417  Q
    |||||||||||||||| ||||||||| | | |||| ||||||||||||||| |||| |||||||| ||| ||  ||  || |||| || |||||||||||    
T  40272927 ctggaaacaacctcttgtgtaaaaaacagggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtg 40272828  T
Q  418 cacc 421  Q
    ||||    
T  40272827 cacc 40272824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 392
Target Start/End: Original strand, 29106595 - 29106665
Alignment:
Q  322 aaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacctctttccaaa 392  Q
    |||||||||||| ||||||||||| ||||||  | |||||||||||| |||| |||||| | |||||||||    
T  29106595 aaacaacctcttgtgtaaaaaataggataaggttacgtacaatacaccaaattgtgggatccctttccaaa 29106665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 318 - 382
Target Start/End: Complemental strand, 31904972 - 31904908
Alignment:
Q  318 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 382  Q
    ||||||||| ||| |||||||||||| | | || ||||||||||||||||| |||| ||||||||    
T  31904972 ctggaaacagcctattatgtaaaaaacagggtatgactgcgtacaatacaccaaatggtgggacc 31904908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 318 - 382
Target Start/End: Complemental strand, 45948953 - 45948889
Alignment:
Q  318 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 382  Q
    |||||||||||||||| ||||||||||| | |||| |||| |||||||||| || | ||||||||    
T  45948953 ctggaaacaacctcttgtgtaaaaaatagggtaaggctgcatacaatacaccaattggtgggacc 45948889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 318 - 420
Target Start/End: Original strand, 7943032 - 7943134
Alignment:
Q  318 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgagagctttagtg 417  Q
    ||||||||| | |||| | ||||||| | | |||||||||||||||||||  |||| |||||| | ||||||| ||  || |||| || |||||||||||    
T  7943032 ctggaaacagcatcttgtctaaaaaacagggtaagactgcgtacaatacatcaaatggtgggatccctttccagaccatgcgtatgcgggagctttagtg 7943131  T
Q  418 cac 420  Q
    |||    
T  7943132 cac 7943134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 374
Target Start/End: Original strand, 21875055 - 21875112
Alignment:
Q  318 ctggaaacaacctcttatgt-aaaaaatatgataagactgcgtacaatacactaaata 374  Q
    |||||||||||||||| ||| |||||| | | |||| |||||||||||||||||||||    
T  21875055 ctggaaacaacctcttgtgttaaaaaagagggtaaggctgcgtacaatacactaaata 21875112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 364
Target Start/End: Complemental strand, 54374460 - 54374415
Alignment:
Q  319 tggaaacaacctcttatgtaaaaaatatgataagactgcgtacaat 364  Q
    ||||||||||||||| ||||||||||| | |||| |||||||||||    
T  54374460 tggaaacaacctcttgtgtaaaaaatagggtaaggctgcgtacaat 54374415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 349 - 421
Target Start/End: Complemental strand, 6411906 - 6411834
Alignment:
Q  349 taagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgagagctttagtgcacc 421  Q
    |||| ||||||||||||||| ||||  ||||||| ||| ||| || ||| |||| || |||||||||||||||    
T  6411906 taaggctgcgtacaatacaccaaatgatgggaccccttcccagaccttgcgtatgcgggagctttagtgcacc 6411834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 318 - 382
Target Start/End: Complemental strand, 54032674 - 54032610
Alignment:
Q  318 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 382  Q
    |||||||||||||||| ||||||||| | | |||| |||| ||||||||||  ||| ||||||||    
T  54032674 ctggaaacaacctcttgtgtaaaaaacagggtaaggctgcatacaatacaccgaatggtgggacc 54032610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 318 - 421
Target Start/End: Original strand, 54484732 - 54484836
Alignment:
Q  318 ctggaaacaacctcttatgtaaaaaat-atgataagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgagagctttagt 416  Q
    ||||||||| |||||| |||||||||  | | |||| ||||||||||||||| |||| |||||||| ||| ||  ||  || |||| || ||||||||||    
T  54484732 ctggaaacagcctcttgtgtaaaaaaacaaggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagt 54484831  T
Q  417 gcacc 421  Q
    |||||    
T  54484832 gcacc 54484836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 318 - 423
Target Start/End: Complemental strand, 33872024 - 33871920
Alignment:
Q  318 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgagagctttagtg 417  Q
    |||||||||||||||| ||||||||  | |||||| ||||||||||||||| |||| |||||||| ||| ||| ||  ||||||| ||||||||||||||    
T  33872024 ctggaaacaacctcttgtgtaaaaac-aggataaggctgcgtacaatacaccaaatggtgggaccccttcccagaccctgtgtatgcgagagctttagtg 33871926  T
Q  418 caccag 423  Q
    ||||||    
T  33871925 caccag 33871920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 318 - 382
Target Start/End: Complemental strand, 11617703 - 11617639
Alignment:
Q  318 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 382  Q
    |||||||||||||||| ||||||||| | | |||||||||||||||||||| |||| ||||||||    
T  11617703 ctggaaacaacctcttgtgtaaaaaacagggtaagactgcgtacaatacaccaaatggtgggacc 11617639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 318 - 382
Target Start/End: Complemental strand, 19427004 - 19426940
Alignment:
Q  318 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 382  Q
    ||||||||| |||||| ||||||||||| | |||||||||||||||||||| |||| ||||||||    
T  19427004 ctggaaacagcctcttgtgtaaaaaatagggtaagactgcgtacaatacaccaaatggtgggacc 19426940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 318 - 382
Target Start/End: Complemental strand, 23419789 - 23419725
Alignment:
Q  318 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 382  Q
    ||||||||| |||||| ||||||||| | | |||||||||||||||||||| |||| ||||||||    
T  23419789 ctggaaacagcctcttgtgtaaaaaacagggtaagactgcgtacaatacaccaaatggtgggacc 23419725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 318 - 382
Target Start/End: Original strand, 7879658 - 7879722
Alignment:
Q  318 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 382  Q
    |||||||||| ||||| ||||||||| | | |||| ||||||||||||||| |||| ||||||||    
T  7879658 ctggaaacaatctcttgtgtaaaaaacaaggtaaggctgcgtacaatacaccaaatggtgggacc 7879722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 318 - 368
Target Start/End: Original strand, 46354214 - 46354264
Alignment:
Q  318 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacac 368  Q
    |||||||||||||||| ||||||||| | | |||| |||||||||||||||    
T  46354214 ctggaaacaacctcttgtgtaaaaaacagggtaaggctgcgtacaatacac 46354264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 318 - 382
Target Start/End: Complemental strand, 14099121 - 14099057
Alignment:
Q  318 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 382  Q
    ||||||| | ||| || ||||||||| | | |||||||||||||||||||| |||| ||||||||    
T  14099121 ctggaaatagccttttgtgtaaaaaacaggttaagactgcgtacaatacaccaaatggtgggacc 14099057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 318 - 382
Target Start/End: Complemental strand, 14409138 - 14409074
Alignment:
Q  318 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 382  Q
    ||||||| | ||| || ||||||||| | | |||||||||||||||||||| |||| ||||||||    
T  14409138 ctggaaatagccttttgtgtaaaaaacaggttaagactgcgtacaatacaccaaatggtgggacc 14409074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 318 - 423
Target Start/End: Complemental strand, 19977829 - 19977724
Alignment:
Q  318 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgagagctttagtg 417  Q
    ||||||||| |||||| ||||||||||| ||||||  |||||||||||||| |||| |||||| | ||| || ||| |||||||| || |||||||||||    
T  19977829 ctggaaacagcctcttttgtaaaaaataggataaggttgcgtacaatacaccaaatggtgggatcccttcccgaaccttgtgtatgcgggagctttagtg 19977730  T
Q  418 caccag 423  Q
    ||||||    
T  19977729 caccag 19977724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 320 - 423
Target Start/End: Complemental strand, 32781401 - 32781299
Alignment:
Q  320 ggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgagagctttagtgca 419  Q
    |||||||||||||| ||||||||| | | |||||||||||||||||||| |||| |||||||| ||| ||| ||  ||||||| || ||||||| |||||    
T  32781401 ggaaacaacctcttgtgtaaaaaacagggtaagactgcgtacaatacaccaaatggtgggaccccttcccagaccctgtgtatgcgggagcttt-gtgca 32781303  T
Q  420 ccag 423  Q
    ||||    
T  32781302 ccag 32781299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 338 - 421
Target Start/End: Complemental strand, 26684715 - 26684632
Alignment:
Q  338 aaaaaatatgataagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgagagctttagtgcacc 421  Q
    |||||||||| |||| |||||||||||| ||||||| |||||||||||| || |||  || |||| || |||||||| ||||||    
T  26684715 aaaaaatatggtaaggctgcgtacaatatactaaatggtgggacctcttcccgaaccctgcgtatgcgggagctttaatgcacc 26684632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 421
Target Start/End: Original strand, 11514456 - 11514558
Alignment:
Q  318 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgagagctttagtg 417  Q
    ||||||||| |||||| ||||||||| |   |||| ||||||||||||||| |||| |||||||| ||| ||| ||  || |||| || |||||||||||    
T  11514456 ctggaaacagcctcttgtgtaaaaaacaaagtaaggctgcgtacaatacaccaaatggtgggacc-cttcccagaccctgcgtatgcgggagctttagtg 11514554  T
Q  418 cacc 421  Q
    ||||    
T  11514555 cacc 11514558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 382
Target Start/End: Original strand, 5450305 - 5450370
Alignment:
Q  318 ctggaaacaacctcttatgt-aaaaaatatgataagactgcgtacaatacactaaatagtgggacc 382  Q
    |||||||||||||||| ||| |||||| ||| |||| ||||||||||||||| |||  ||||||||    
T  5450305 ctggaaacaacctcttgtgtaaaaaaacatggtaaggctgcgtacaatacaccaaagggtgggacc 5450370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 318 - 382
Target Start/End: Complemental strand, 8455431 - 8455367
Alignment:
Q  318 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 382  Q
    ||||||||| |||||| ||||||| | | | |||| ||||||||||||||| |||| ||||||||    
T  8455431 ctggaaacagcctcttgtgtaaaacacagggtaaggctgcgtacaatacaccaaatggtgggacc 8455367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 316 - 421
Target Start/End: Original strand, 46849 - 46954
Alignment:
Q  316 tgctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgagagctttag 415  Q
    |||||||||||||||||| ||||||||||| | ||||  |||||||||||||| |||| |||||||| ||| ||  ||  || |||| || |||||||||    
T  46849 tgctggaaacaacctcttgtgtaaaaaatagggtaaggttgcgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagctttag 46948  T
Q  416 tgcacc 421  Q
    ||||||    
T  46949 tgcacc 46954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 323 - 419
Target Start/End: Complemental strand, 24882 - 24786
Alignment:
Q  323 aacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgagagctttagtgca 419  Q
    |||| |||||| ||||||||| | | |||| |||||||||| |||| |||| |||||||| ||| || |||  || |||| || |||||||||||||    
T  24882 aacagcctcttgtgtaaaaaacagggtaaggctgcgtacaacacaccaaatggtgggaccccttcccgaaccctgcgtatgcgggagctttagtgca 24786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 318 - 421
Target Start/End: Original strand, 19027868 - 19027971
Alignment:
Q  318 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgagagctttagtg 417  Q
    ||||||||||| |||| ||||||||| | | |||| ||||||||||||||| || | |||||||| ||||||| ||| || ||||  | |||||||||||    
T  19027868 ctggaaacaacatcttgtgtaaaaaacagggtaaggctgcgtacaatacaccaattggtgggacccctttccagactctgcgtatgtgggagctttagtg 19027967  T
Q  418 cacc 421  Q
    ||||    
T  19027968 cacc 19027971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 318 - 382
Target Start/End: Complemental strand, 9987949 - 9987885
Alignment:
Q  318 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 382  Q
    |||||||||||||||| |||||| |||| | |||| |||| |||||||||| |||| ||||||||    
T  9987949 ctggaaacaacctcttgtgtaaacaatagggtaaggctgcatacaatacaccaaatggtgggacc 9987885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 318 - 368
Target Start/End: Original strand, 10660424 - 10660474
Alignment:
Q  318 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacac 368  Q
    |||||||||||||||||||||||||||| | || | |||| ||||||||||    
T  10660424 ctggaaacaacctcttatgtaaaaaatagggtatggctgcatacaatacac 10660474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 318 - 368
Target Start/End: Original strand, 10874569 - 10874619
Alignment:
Q  318 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacac 368  Q
    |||||||||||||||||||||||||||| | || | |||| ||||||||||    
T  10874569 ctggaaacaacctcttatgtaaaaaatagggtatggctgcatacaatacac 10874619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 318 - 368
Target Start/End: Complemental strand, 16408718 - 16408668
Alignment:
Q  318 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacac 368  Q
    ||||||||| |||||| ||||||||| | | ||||||||||||||||||||    
T  16408718 ctggaaacagcctcttgtgtaaaaaacagggtaagactgcgtacaatacac 16408668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 379
Target Start/End: Complemental strand, 10380053 - 10379997
Alignment:
Q  322 aaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtggg 379  Q
    |||||||||||| |||||||| || ||||| | |||||||||||||| ||||||||||    
T  10380053 aaacaacctcttgtgtaaaaa-taggataaaattgcgtacaatacaccaaatagtggg 10379997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 382
Target Start/End: Original strand, 14983857 - 14983918
Alignment:
Q  321 gaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 382  Q
    |||||| |||||| ||||||||||| | ||||  ||| ||||||||||||||| ||||||||    
T  14983857 gaaacagcctcttgtgtaaaaaatagggtaaggttgcctacaatacactaaatggtgggacc 14983918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 379
Target Start/End: Complemental strand, 51865149 - 51865092
Alignment:
Q  322 aaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtggg 379  Q
    ||||| |||||| ||||||||| ||| |||| ||||||||||||||| |||| |||||    
T  51865149 aaacagcctcttgtgtaaaaaacatggtaaggctgcgtacaatacaccaaatggtggg 51865092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 318 - 382
Target Start/End: Complemental strand, 17043509 - 17043445
Alignment:
Q  318 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 382  Q
    ||||||||| |||||| ||||||| | | | |||| ||||||||||||||| |||| ||||||||    
T  17043509 ctggaaacagcctcttgtgtaaaatacagggtaaggctgcgtacaatacaccaaatggtgggacc 17043445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 318 - 421
Target Start/End: Complemental strand, 20639774 - 20639670
Alignment:
Q  318 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaataca-ctaaatagtgggacctctttccaaactttgtgtatacgagagctttagt 416  Q
    ||||||||| |||||| ||||||||| | | |||| |||||||||||||| | |||| |||||||| ||| ||  ||  || |||| || ||||||||||    
T  20639774 ctggaaacagcctcttgtgtaaaaaacagggtaaggctgcgtacaatacaccaaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagt 20639675  T
Q  417 gcacc 421  Q
    |||||    
T  20639674 gcacc 20639670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 318 - 382
Target Start/End: Original strand, 25629069 - 25629133
Alignment:
Q  318 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 382  Q
    |||||||||  ||||| ||||||||||| | |||| ||| ||||||||||| |||| ||||||||    
T  25629069 ctggaaacagtctcttgtgtaaaaaatagggtaaggctgtgtacaatacaccaaatggtgggacc 25629133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 318 - 382
Target Start/End: Complemental strand, 41018908 - 41018845
Alignment:
Q  318 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 382  Q
    |||||||||||||||| |||||||  || | |||| || |||||||||||| |||||||||||||    
T  41018908 ctggaaacaacctcttgtgtaaaat-tagggtaaggctacgtacaatacaccaaatagtgggacc 41018845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 318 - 382
Target Start/End: Original strand, 47443977 - 47444041
Alignment:
Q  318 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 382  Q
    ||||||||| ||||||  |||||||| | | |||| ||||||||||||||| |||| ||||||||    
T  47443977 ctggaaacagcctcttgcgtaaaaaacagggtaaggctgcgtacaatacaccaaatggtgggacc 47444041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 318 - 368
Target Start/End: Original strand, 22187305 - 22187355
Alignment:
Q  318 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacac 368  Q
    ||||||||| |||||| ||||||||| ||||||||||||||||||||||||    
T  22187305 ctggaaacagcctcttgtgtaaaaaacatgataagactgcgtacaatacac 22187355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 318 - 382
Target Start/End: Original strand, 1405207 - 1405271
Alignment:
Q  318 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 382  Q
    |||||||||||||||||| |||||||||   ||||  |||||||||||||| |||| ||||||||    
T  1405207 ctggaaacaacctcttatataaaaaatagagtaagtttgcgtacaatacaccaaatggtgggacc 1405271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 318 - 382
Target Start/End: Original strand, 24448910 - 24448974
Alignment:
Q  318 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 382  Q
    ||||||||| ||| || ||||||||||| | |||| ||||||||||||||| |||| ||||||||    
T  24448910 ctggaaacagccttttgtgtaaaaaatagggtaaggctgcgtacaatacaccaaatggtgggacc 24448974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 318 - 368
Target Start/End: Complemental strand, 12006445 - 12006395
Alignment:
Q  318 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacac 368  Q
    |||||||||||||||||||||||||||| | |||| || | ||||||||||    
T  12006445 ctggaaacaacctcttatgtaaaaaatagggtaaggctccatacaatacac 12006395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 29334413 - 29334465
Alignment:
Q  316 tgctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacac 368  Q
    ||||||||||| |||||| ||||||||| | | |||| |||||||||||||||    
T  29334413 tgctggaaacagcctcttgtgtaaaaaacaaggtaaggctgcgtacaatacac 29334465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 319 - 419
Target Start/End: Original strand, 43207539 - 43207640
Alignment:
Q  319 tggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaa-tagtgggacctctttccaaactttgtgtatacgagagctttagtg 417  Q
    ||||||||||||||||||| ||||| | | |||||| || |||||||||| ||| | |||||||||||| ||| ||  | ||||| ||||||||||||||    
T  43207539 tggaaacaacctcttatgtgaaaaacagggtaagacggcatacaatacaccaaattggtgggacctcttcccagaccctatgtatgcgagagctttagtg 43207638  T
Q  418 ca 419  Q
    ||    
T  43207639 ca 43207640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 322 - 382
Target Start/End: Original strand, 10163806 - 10163866
Alignment:
Q  322 aaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 382  Q
    |||||||||||||||||||||||||||||||| ||  |||||||||  |||| ||||||||    
T  10163806 aaacaacctcttatgtaaaaaatatgataagattgtatacaatacatcaaatggtgggacc 10163866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 319 - 382
Target Start/End: Complemental strand, 46248067 - 46248004
Alignment:
Q  319 tggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 382  Q
    |||||||| |||||| ||||||||| | | |||||||||||||||||||| |||| ||||||||    
T  46248067 tggaaacagcctcttgtgtaaaaaacagggtaagactgcgtacaatacaccaaatggtgggacc 46248004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 319 - 419
Target Start/End: Complemental strand, 23768434 - 23768334
Alignment:
Q  319 tggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgagagctttagtgc 418  Q
    |||||||| |||||| ||||||||| | | |||| ||||||||||||||| |||| |||||||  ||| ||| ||  || |||| || ||||||||||||    
T  23768434 tggaaacagcctcttgtgtaaaaaacagggtaaggctgcgtacaatacaccaaatggtgggacaccttcccagaccctgcgtatgcgggagctttagtgc 23768335  T
Q  419 a 419  Q
    |    
T  23768334 a 23768334  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 423
Target Start/End: Complemental strand, 32632671 - 32632567
Alignment:
Q  318 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgagagctttagtg 417  Q
    ||||||||| |||||| ||||||||  | | |||| ||||||||||||||| |||| |||||||| ||| ||||||  ||  ||| || |||||| ||||    
T  32632671 ctggaaacagcctcttgtgtaaaaac-agggtaaggctgcgtacaatacaccaaatggtgggaccccttcccaaaccctgcatatgcgggagcttgagtg 32632573  T
Q  418 caccag 423  Q
    ||||||    
T  32632572 caccag 32632567  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 318 - 386
Target Start/End: Complemental strand, 25468378 - 25468310
Alignment:
Q  318 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacctctt 386  Q
    |||||||||||||||| ||||||||  | | ||||  |||||||||||||| |||| || |||||||||    
T  25468378 ctggaaacaacctcttgtgtaaaaatcagggtaaggttgcgtacaatacaccaaatggttggacctctt 25468310  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 318 - 382
Target Start/End: Complemental strand, 31382328 - 31382265
Alignment:
Q  318 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 382  Q
    ||||||||| |||||| ||||||||  | |||||| ||||||||||||||| |||| ||||||||    
T  31382328 ctggaaacagcctcttgtgtaaaaac-aggataaggctgcgtacaatacaccaaatggtgggacc 31382265  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 318 - 382
Target Start/End: Complemental strand, 44485224 - 44485160
Alignment:
Q  318 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 382  Q
    |||||||||||| ||| ||||||| | ||| |||| ||||||||||||||| |||| || |||||    
T  44485224 ctggaaacaaccacttgtgtaaaagacatggtaaggctgcgtacaatacaccaaatggttggacc 44485160  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 318 - 382
Target Start/End: Original strand, 46991847 - 46991911
Alignment:
Q  318 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 382  Q
    |||||||||||||||| ||||||||| | | |||| ||| |||||||||||  ||| ||||||||    
T  46991847 ctggaaacaacctcttgtgtaaaaaacagggtaaggctgtgtacaatacaccgaatggtgggacc 46991911  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 319 - 382
Target Start/End: Original strand, 44530170 - 44530233
Alignment:
Q  319 tggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 382  Q
    ||||||||||||||| ||||||||| | | |||| ||||||||||||||| |||| ||||||||    
T  44530170 tggaaacaacctcttgtgtaaaaaacagggtaaggctgcgtacaatacaccaaatggtgggacc 44530233  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 318 - 382
Target Start/End: Complemental strand, 8897879 - 8897815
Alignment:
Q  318 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 382  Q
    |||||||||||| ||| ||||||||||| | |||| || |||||||||||| |||| ||||||||    
T  8897879 ctggaaacaaccgcttgtgtaaaaaatagggtaaggctacgtacaatacaccaaatggtgggacc 8897815  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 318 - 382
Target Start/End: Original strand, 36720816 - 36720880
Alignment:
Q  318 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 382  Q
    ||||||||| |||||| ||||||||| | | |||| ||||||||||||||| |||| ||||||||    
T  36720816 ctggaaacagcctcttgtgtaaaaaacagggtaaggctgcgtacaatacaccaaatggtgggacc 36720880  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 382
Target Start/End: Original strand, 12625909 - 12625974
Alignment:
Q  318 ctggaaacaacctcttatgt-aaaaaatatgataagactgcgtacaatacactaaatagtgggacc 382  Q
    |||||||||||||||| ||| |||||| | | ||||||||| |||||||||| |||| ||||||||    
T  12625909 ctggaaacaacctcttgtgtaaaaaaacagggtaagactgcatacaatacaccaaatggtgggacc 12625974  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 419
Target Start/End: Complemental strand, 28817741 - 28817640
Alignment:
Q  318 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgagagctttagtg 417  Q
    ||||||||| |||||| ||||||||| | | |||| |||||||||||||||  ||| |||||||| ||| ||  ||  || |||| || |||||||||||    
T  28817741 ctggaaacagcctcttgtgtaaaaaacagggtaaggctgcgtacaatacacccaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtg 28817642  T
Q  418 ca 419  Q
    ||    
T  28817641 ca 28817640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 423
Target Start/End: Original strand, 29877114 - 29877219
Alignment:
Q  318 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgagagctttagtg 417  Q
    ||||||||| ||| || ||||||||| | | |||| ||||||||||||||| |||| |||||||| ||| ||  ||  || |||| || |||| ||||||    
T  29877114 ctggaaacagccttttgtgtaaaaaacagggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagcgttagtg 29877213  T
Q  418 caccag 423  Q
    ||||||    
T  29877214 caccag 29877219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 419
Target Start/End: Original strand, 36918144 - 36918245
Alignment:
Q  318 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgagagctttagtg 417  Q
    ||||||||||  |||||||||||||| | | |||| ||| ||||||||||| ||||||| |||   ||| ||||||  | ||||| ||||||||||| ||    
T  36918144 ctggaaacaatttcttatgtaaaaaacagggtaaggctgtgtacaatacaccaaatagtaggattccttcccaaaccctatgtatgcgagagctttaatg 36918243  T
Q  418 ca 419  Q
    ||    
T  36918244 ca 36918245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 318 - 382
Target Start/End: Complemental strand, 5135404 - 5135340
Alignment:
Q  318 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 382  Q
    ||||||||| |||||| ||||||||| | | |||| ||| ||||||||||| |||| ||||||||    
T  5135404 ctggaaacagcctcttgtgtaaaaaagagggtaaggctgtgtacaatacaccaaatggtgggacc 5135340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 318 - 382
Target Start/End: Complemental strand, 8484053 - 8483989
Alignment:
Q  318 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 382  Q
    |||||||||||||||| ||||||||| | |  ||| ||||||||||||||| || | ||||||||    
T  8484053 ctggaaacaacctcttgtgtaaaaaacagggcaaggctgcgtacaatacaccaattggtgggacc 8483989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 328 - 368
Target Start/End: Original strand, 16225049 - 16225089
Alignment:
Q  328 cctcttatgtaaaaaatatgataagactgcgtacaatacac 368  Q
    |||||||||||||||| | | ||||||||||||||||||||    
T  16225049 cctcttatgtaaaaaacagggtaagactgcgtacaatacac 16225089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 318 - 378
Target Start/End: Original strand, 17823596 - 17823656
Alignment:
Q  318 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgg 378  Q
    ||||||||| |||||| ||||||||  | |||||||||||||| ||||||| |||| ||||    
T  17823596 ctggaaacagcctcttgtgtaaaaaccaggataagactgcgtaaaatacaccaaatggtgg 17823656  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 319 - 382
Target Start/End: Original strand, 20400688 - 20400751
Alignment:
Q  319 tggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 382  Q
    ||||||||| ||||| ||||||||| | | |||||||||||||| |||||||||||| ||||||    
T  20400688 tggaaacaatctcttgtgtaaaaaacagggtaagactgcgtacagtacactaaatagcgggacc 20400751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 319 - 378
Target Start/End: Complemental strand, 32728270 - 32728211
Alignment:
Q  319 tggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgg 378  Q
    ||||||||||||||||||||||||| | | |||||||| |||||||| || |||||||||    
T  32728270 tggaaacaacctcttatgtaaaaaacagggtaagactgtgtacaatataccaaatagtgg 32728211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 318 - 382
Target Start/End: Complemental strand, 3815192 - 3815128
Alignment:
Q  318 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 382  Q
    |||||||||  || || ||||||||||||| || ||||||||||||||||| |||| ||||||||    
T  3815192 ctggaaacagactattgtgtaaaaaatatggtacgactgcgtacaatacaccaaatggtgggacc 3815128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 10565602 - 10565654
Alignment:
Q  101 atcaatcgaaatggtacaagaggaagagagtgaataatttattgccacatcat 153  Q
    |||||| |||||| |||||||||  ||||||||| ||||||||||||||||||    
T  10565602 atcaattgaaatgatacaagaggttgagagtgaacaatttattgccacatcat 10565654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 368
Target Start/End: Original strand, 6024256 - 6024303
Alignment:
Q  321 gaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacac 368  Q
    |||||| |||||| ||||||||| ||| ||||||||||||||||||||    
T  6024256 gaaacagcctcttgtgtaaaaaacatggtaagactgcgtacaatacac 6024303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 372
Target Start/End: Complemental strand, 24751172 - 24751135
Alignment:
Q  335 tgtaaaaaatatgataagactgcgtacaatacactaaa 372  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  24751172 tgtaaaaaatagggtaagactgcgtacaatacactaaa 24751135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 322 - 382
Target Start/End: Original strand, 1941879 - 1941939
Alignment:
Q  322 aaacaacctcttatgtaaaaaatatgataagactgcgtacaatacactaaatagtgggacc 382  Q
    |||||||||||| ||||||||| | | |||| |||||||||||||||  ||| ||||||||    
T  1941879 aaacaacctcttgtgtaaaaaacagggtaaggctgcgtacaatacaccgaatggtgggacc 1941939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 318 - 419
Target Start/End: Original strand, 58997 - 59100
Alignment:
Q  318 ctggaaacaacctcttatgtaaaaaatatgataagactgcgtacaatacac--taaatagtgggacctctttccaaactttgtgtatacgagagctttag 415  Q
    ||||||||| |||||| | ||||||| | | ||||||||||||||||||||   |||| |||||||| ||| ||| ||| || |||| || |||||||||    
T  58997 ctggaaacagcctcttgtataaaaaacagggtaagactgcgtacaatacaccaaaaatggtgggaccccttcccagactctgcgtatgcgggagctttag 59096  T
Q  416 tgca 419  Q
    ||||    
T  59097 tgca 59100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 382
Target Start/End: Complemental strand, 10134 - 10101
Alignment:
Q  349 taagactgcgtacaatacactaaatagtgggacc 382  Q
    |||||||||||||||||||| |||||||||||||    
T  10134 taagactgcgtacaatacaccaaatagtgggacc 10101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 382
Target Start/End: Complemental strand, 20462 - 20429
Alignment:
Q  349 taagactgcgtacaatacactaaatagtgggacc 382  Q
    |||||||||||||||||||| |||||||||||||    
T  20462 taagactgcgtacaatacaccaaatagtgggacc 20429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 349 - 421
Target Start/End: Original strand, 24699 - 24771
Alignment:
Q  349 taagactgcgtacaatacactaaatagtgggacctctttccaaactttgtgtatacgagagctttagtgcacc 421  Q
    |||||||||||| ||||||| |||||||||  || ||||||| ||  || ||||||| |||||| ||||||||    
T  24699 taagactgcgtataatacaccaaatagtggaccccctttccagaccctgcgtatacgggagcttcagtgcacc 24771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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