View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16170_high_4 (Length: 350)
Name: NF16170_high_4
Description: NF16170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16170_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 30 - 327
Target Start/End: Complemental strand, 49008175 - 49007878
Alignment:
| Q |
30 |
cctcttgagctataactatccacacttggtgctggttttgtacctaaaacagttttattaaattgcatgcttgcttttggattagtattgcacttaatga |
129 |
Q |
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| T |
49008175 |
cctcttgagctataactatccacacttggtgctggttttgtacctaaaacagttttattaaattgcatgcttgcttttggattagtattgcacttaatga |
49008076 |
T |
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| Q |
130 |
aatccttgataagttctccattaattggattcnnnnnnntagatggaaacttagtttgaatgtaatatgttatatcctcagaactatttgatatgaaaac |
229 |
Q |
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| T |
49008075 |
aatccttgataagttctccattaattggattcaaaaaaatagatggaaacttagtttgaatgtaatatgttatatcctcagaactatttgatatgaaaac |
49007976 |
T |
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| Q |
230 |
acccgcaacaacttttattctgtccaagttatccacttgagtagcaagtgttcggttcttgtcttcacacaccacgatcttgtttcttgctctgatga |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49007975 |
acccgcaacaacttttattctgtccaagttatccacttgagtagcaagtgttcggttcttgtcttcacacaccacgatcttgtttcttgctctgatga |
49007878 |
T |
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