View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16170_high_6 (Length: 319)
Name: NF16170_high_6
Description: NF16170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16170_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 27 - 290
Target Start/End: Original strand, 25089558 - 25089820
Alignment:
| Q |
27 |
tcagccacgccgtatgaaatccaaaatatggcaaatatgcgccggacctgctgtcaagattccgaagattggctcaaaagtctactacttcccacaaggt |
126 |
Q |
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||||||||||||| || | |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
25089558 |
tcagccacgccgtgtggactccaaaatatggcaaatacgcgctggacctgctgtcaagattccgaagattggctcaaaagtctactacttctcagaaggc |
25089657 |
T |
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| Q |
127 |
cacttggaacatgctagtccatcccctaacattgaaacacagctccaatctatgtcttcgccttccatccgttctatgtatcatctcatctattgatctt |
226 |
Q |
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| T |
25089658 |
cacttggaacatgcttgttcatcccctaacattgaaacagagctcc-ttctatgtcttcgccctccatccgttctctgcatcatctcatctgttgatctt |
25089756 |
T |
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| Q |
227 |
ctggcggatcctcacaccgatgaagttttcgccaaactgctcctcactccggtaacaactgatg |
290 |
Q |
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| T |
25089757 |
ctggcaaatcttcacaccgatgaagtctttgcgaaactgctccttactccggtaacaactgatg |
25089820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 27 - 290
Target Start/End: Original strand, 25147528 - 25147790
Alignment:
| Q |
27 |
tcagccacgccgtatgaaatccaaaatatggcaaatatgcgccggacctgctgtcaagattccgaagattggctcaaaagtctactacttcccacaaggt |
126 |
Q |
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| T |
25147528 |
tcagccacgccgtgtggactccaaaatatggcaaatacgcgctggacctgctgtcaagattccgaagattggctcaaaagtctactacttctcagaaggc |
25147627 |
T |
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| Q |
127 |
cacttggaacatgctagtccatcccctaacattgaaacacagctccaatctatgtcttcgccttccatccgttctatgtatcatctcatctattgatctt |
226 |
Q |
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| T |
25147628 |
cacttggaacatgcttgttcatcccctaacattgaaacagagctcc-ttctatgtcttcgccctccatccgttctctgcatcatctcatctgttgatctt |
25147726 |
T |
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| Q |
227 |
ctggcggatcctcacaccgatgaagttttcgccaaactgctcctcactccggtaacaactgatg |
290 |
Q |
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| T |
25147727 |
ctggcaaatcttcacaccgatgaagtctttgcgaaactgctccttactccggtaacaactgatg |
25147790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 47 - 140
Target Start/End: Complemental strand, 25728466 - 25728373
Alignment:
| Q |
47 |
ccaaaatatggcaaatatgcgccggacctgctgtcaagattccgaagattggctcaaaagtctactacttcccacaaggtcacttggaacatgc |
140 |
Q |
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| T |
25728466 |
ccaaaatatggcagatatgcgccggccccgacgtcaagattccaaagattcactctaaagtttactacttcccacgaggtcatctggaacatgc |
25728373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 140
Target Start/End: Original strand, 25224782 - 25224875
Alignment:
| Q |
47 |
ccaaaatatggcaaatatgcgccggacctgctgtcaagattccgaagattggctcaaaagtctactacttcccacaaggtcacttggaacatgc |
140 |
Q |
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| T |
25224782 |
ccaaaatatggcagatatgcgttggccccgacgtcaagattccgaagattcactctaaagtttactacttcccacgaggtcatctggaacatgc |
25224875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 140
Target Start/End: Original strand, 25288938 - 25289031
Alignment:
| Q |
47 |
ccaaaatatggcaaatatgcgccggacctgctgtcaagattccgaagattggctcaaaagtctactacttcccacaaggtcacttggaacatgc |
140 |
Q |
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||||||||||||| ||||||| || || | |||||||||||||||||| ||| ||||| ||||||||||||| |||||| |||||||||| |
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| T |
25288938 |
ccaaaatatggcagatatgcgttggccccgacgtcaagattccgaagattcactctaaagtttactacttcccacgaggtcatctggaacatgc |
25289031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 281
Target Start/End: Complemental strand, 26099296 - 26099248
Alignment:
| Q |
233 |
gatcctcacaccgatgaagttttcgccaaactgctcctcactccggtaa |
281 |
Q |
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||||||||||| |||||||| || |||||||||||||||||||| |||| |
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| T |
26099296 |
gatcctcacacagatgaagtctttgccaaactgctcctcactcccgtaa |
26099248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 282
Target Start/End: Complemental strand, 25443754 - 25443691
Alignment:
| Q |
219 |
ttgatcttctggcggatcctcacaccgatgaagttttcgccaaactgctcctcactccggtaac |
282 |
Q |
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| T |
25443754 |
ttgatctcctagctgatcctcacaccgatgaggtcttcgccaaattgctactcagtccggtaac |
25443691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 283
Target Start/End: Original strand, 25618083 - 25618133
Alignment:
| Q |
233 |
gatcctcacaccgatgaagttttcgccaaactgctcctcactccggtaaca |
283 |
Q |
| |
|
|||||| |||| |||||||| ||||||||||||||||||||||| |||||| |
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| T |
25618083 |
gatccttacactgatgaagtcttcgccaaactgctcctcactcccgtaaca |
25618133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 25617936 - 25617992
Alignment:
| Q |
85 |
attccgaagattggctcaaaagtctactacttcccacaaggtcacttggaacatgct |
141 |
Q |
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||||||||| || ||| |||||||||||||| ||| |||||||||| ||||||||| |
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| T |
25617936 |
attccgaagcttcactctaaagtctactactttccaaaaggtcacttagaacatgct |
25617992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 282
Target Start/End: Original strand, 560760 - 560839
Alignment:
| Q |
203 |
tgtatcatctcatctattgatcttctggcggatcctcacaccgatgaagttttcgccaaactgctcctcactccggtaac |
282 |
Q |
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||||||||||| || ||||||| || || ||||||||||| ||||| || ||||| |||||||| |||||||| ||||| |
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| T |
560760 |
tgtatcatctccgctgttgatctcctcgccgatcctcacactgatgaggtcttcgctaaactgctgctcactcctgtaac |
560839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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