View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16171_high_10 (Length: 255)
Name: NF16171_high_10
Description: NF16171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16171_high_10 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 5361529 - 5361765
Alignment:
| Q |
1 |
ataattgtgtttagcctatgtttaatgaatgtgttgtaatgttgaaaacaaaatttgaaatgtaacgatcaaaaactaacttgatactcataatcaaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5361529 |
ataattgtgtttagcctatgtttaatgaatatgttgtaatgttgaaaacaaaatttgaaatgtaacgatcaaaaactaacttgatactcataatcaaaga |
5361628 |
T |
|
| Q |
101 |
taagttataacatctcataattgacatttttacaaagaatcaaagtaaataccaaaatactagtcaaaagtaactaccaaagtatcacaactcctaattg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
5361629 |
taagttataacatctcataattgacatttttacaaagaatcaaagtaaatatc------------------aactaccaaagtatcacaactcctaattg |
5361710 |
T |
|
| Q |
201 |
acttgtaccactgatttttacaaaaataactacaaatttatcctaacaatgagac |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5361711 |
acttgtaccactgatttttacaaaaataacaacaaatttatcctaacaatgagac |
5361765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University