View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16171_low_1 (Length: 647)
Name: NF16171_low_1
Description: NF16171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16171_low_1 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 611; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 611; E-Value: 0
Query Start/End: Original strand, 13 - 647
Target Start/End: Original strand, 15753377 - 15754011
Alignment:
| Q |
13 |
atgaacatatagattaagcaccaaataatgagtccgattaatgtgtataataatcacatattacaacattaatatttgaattatgtttatgttgtatcgc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15753377 |
atgaacatatagattaagcaccaaataatgagtccggttaatgtgtataataatcacatattacaacattaatatttgaattatgtttatgttgtatcgc |
15753476 |
T |
|
| Q |
113 |
agtggttgtgttgatttcagctagcattgcagtggttccagctgcattaagtgttcctgatatggagccatggtttcatctagcacttgtggttttattg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15753477 |
agtggttgtgttgatttcagctagcattgcagtggttccagctgcattaagtgttcctgatatggagccatggtttcatctagcacttgtggttttattg |
15753576 |
T |
|
| Q |
213 |
agtggatgcccttgtgctcttatcctctccacaccggttgcaatcttttgtgctctcacaaaagctgcaataagtggattactattgaaaggtggagatt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15753577 |
agtggatgcccttgtgctcttatcctctccacaccggttgcaatcttttgtgctctcacaaaagctgcaataagtggattactattgaaaggtggagatt |
15753676 |
T |
|
| Q |
313 |
atcttgaaacactttctagaattaagacggtggcttttgataaaacaggcaccataacaagaggagagttctctgtaacagattttagtgctggagatga |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15753677 |
atcttgaaacactttctagaattaagacggtggcttttgataaaacaggcaccataacaagaggagagttctctgtaacagattttagtgctggagatga |
15753776 |
T |
|
| Q |
413 |
catcaacaatgagaccttattgtactggtaggttttcatttatctatcgaacgtaataatgttcgtaatttagccctgcttgaataaacaaattaattga |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
15753777 |
catcaacaatgagaccttattgtactggtaggttttcatttatctatcgaacgtaataatgttcgtagtttagccctgcttgaataaacaaattaatgga |
15753876 |
T |
|
| Q |
513 |
gcaattatagcatacacggttatcataaaagagcttatgtatcagctatttggttaatgaaaactttggtaggatttcaagtattgagagtaaatcaagt |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15753877 |
gcaattatagcatacacggttatcataaaagagcttatgtataagctatttggttaatgaaaactttggtaggatttcaagtattgagagtaaatcaagt |
15753976 |
T |
|
| Q |
613 |
catccagtggcaggcgcactagtggactatgcaag |
647 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| |
|
|
| T |
15753977 |
catccagtggcaggtgcactagtggattatgcaag |
15754011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 496 - 563
Target Start/End: Original strand, 24193473 - 24193540
Alignment:
| Q |
496 |
ataaacaaattaattgagcaattatagcatacacggttatcataaaagagcttatgtatcagctattt |
563 |
Q |
| |
|
|||||||| ||||||||||| |||||||||| ||| |||||||| ||| ||||||||| || ||||| |
|
|
| T |
24193473 |
ataaacaacttaattgagcacttatagcataaacgcttatcatataagtacttatgtataagttattt |
24193540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University