View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16171_low_10 (Length: 263)

Name: NF16171_low_10
Description: NF16171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16171_low_10
NF16171_low_10
[»] chr7 (4 HSPs)
chr7 (10-108)||(37592048-37592146)
chr7 (162-246)||(37592200-37592284)
chr7 (162-242)||(37462009-37462085)
chr7 (29-103)||(37462214-37462288)


Alignment Details
Target: chr7 (Bit Score: 91; Significance: 4e-44; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 10 - 108
Target Start/End: Original strand, 37592048 - 37592146
Alignment:
Q  10 aagaatatgagagagaatgattactggcttacctcttccaaagatagattaagatccctcctgatagcatcttgagctggagatgaatatccagtctgg 108  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37592048 aagaatatgagagagaatgattactggcttacctcttccaaagacagattaagatccctcctgatagcatcttgagctggagatgaatacccagtctgg 37592146  T

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Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 162 - 246
Target Start/End: Original strand, 37592200 - 37592284
Alignment:
Q  162 tgctgatttacagagaaagaagtgaagacttacacaagcaccaaattcataagaaccacaaactgcaatgaatgtggtgaaataa 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37592200 tgctgatttacagagaaagaagtgaagacttacacaagcaccaaattcataagaaccacaaactgcaatgaatgtggtgaaataa 37592284  T

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Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 162 - 242
Target Start/End: Complemental strand, 37462085 - 37462009
Alignment:
Q  162 tgctgatttacagagaaagaagtgaagacttacacaagcaccaaattcataagaaccacaaactgcaatgaatgtggtgaa 242  Q
    |||||||||||||    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37462085 tgctgatttacag----agaagtaaagacttacacaagcaccaaattcataagaaccacaaactgcaatgaatgtggtgaa 37462009  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 29 - 103
Target Start/End: Complemental strand, 37462288 - 37462214
Alignment:
Q  29 attactggcttacctcttccaaagatagattaagatccctcctgatagcatcttgagctggagatgaatatccag 103  Q
    ||||||||||||||||| ||||||| ||| |||||||| |||| ||||| ||||||| |||||||||||||||||    
T  37462288 attactggcttacctctgccaaagacagactaagatccttcctaatagcttcttgagttggagatgaatatccag 37462214  T

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