View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16171_low_12 (Length: 227)
Name: NF16171_low_12
Description: NF16171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16171_low_12 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 3778279 - 3778505
Alignment:
| Q |
1 |
attgggtgctattgttgtgcattttctgcaaggctctcgctgtacttgcctccatttttgagaaactattcaccaagaaaccatgagcaagagaaaagtt |
100 |
Q |
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| T |
3778279 |
attgggtgctattgttgtgcattttctgcaaggctctcgctgtacttgcctccatttttgagaaactattcaccaagaaaccatgagcaagagaaaagtt |
3778378 |
T |
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| Q |
101 |
cttggaatgtagaagnnnnnnnccgtaagcaggactagatcgatcatgaaaaaattcaggagggagatcttggccatgaatagggatacaacccggaatc |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3778379 |
cttggaatgtagaagaaaaaaaccgtaagcaggactagatcgatcatgaaaaaattcaggagggagatcttggccatgaatagggatacaacccggaatc |
3778478 |
T |
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| Q |
201 |
tgaatagggtcggtgtgatctttgtat |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
3778479 |
tgaatagggtcggtgtgatctttgtat |
3778505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 26 - 227
Target Start/End: Complemental strand, 3707552 - 3707351
Alignment:
| Q |
26 |
ctgcaaggctctcgctgtacttgcctccatttttgagaaactattcaccaagaaaccatgagcaagagaaaagttcttggaatgtagaagnnnnnnnccg |
125 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| | | |
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| T |
3707552 |
ctgcaaggctctccctgtacttgcctccatttttgagaaactattcgccaagaaaccatgagcaagagacaagttcttggaatgtagaagaaaaatactg |
3707453 |
T |
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| Q |
126 |
taagcaggactagatcgatcatgaaaaaattcaggagggagatcttggccatgaatagggatacaacccggaatctgaatagggtcggtgtgatctttgt |
225 |
Q |
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| T |
3707452 |
taagcaacactagatcgatcatgaaaaaattcgggaggaagatctttgccgagaataggtagacatcccggaatctgaataaggtcagtgtgatctttgt |
3707353 |
T |
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| Q |
226 |
at |
227 |
Q |
| |
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|| |
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| T |
3707352 |
at |
3707351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 26 - 227
Target Start/End: Original strand, 3770643 - 3770844
Alignment:
| Q |
26 |
ctgcaaggctctcgctgtacttgcctccatttttgagaaactattcaccaagaaaccatgagcaagagaaaagttcttggaatgtagaagnnnnnnnccg |
125 |
Q |
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||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | | |
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| T |
3770643 |
ctgcaaggctctccctgtactagcctccatttttgagaaactattcaccaagaaaccatgagcaagagacaagttcttggaatgtagaagaaaaaaactg |
3770742 |
T |
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| Q |
126 |
taagcaggactagatcgatcatgaaaaaattcaggagggagatcttggccatgaatagggatacaacccggaatctgaatagggtcggtgtgatctttgt |
225 |
Q |
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||| | |||||||||||||||||||||||| ||||| |||||||||| | |||||| | ||||||||||| ||||||| |||| || |||||||||| |
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| T |
3770743 |
taacgaacactagatcgatcatgaaaaaattcgggaggaagatcttggctacaaataggtagacaacccggaaactgaataaggtcagtatgatctttgt |
3770842 |
T |
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| Q |
226 |
at |
227 |
Q |
| |
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|| |
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| T |
3770843 |
at |
3770844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 26 - 227
Target Start/End: Complemental strand, 3719061 - 3718860
Alignment:
| Q |
26 |
ctgcaaggctctcgctgtacttgcctccatttttgagaaactattcaccaagaaaccatgagcaagagaaaagttcttggaatgtagaagnnnnnnnccg |
125 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||| |||| |
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| T |
3719061 |
ctgcaaggctctccctgtacttgcctccatttttgagaaactattcaccaagaaaccatgagcaagagacgagtttttgcaatgttgaagaaaaagctta |
3718962 |
T |
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| Q |
126 |
taagcaggactagatcgatcatgaaaaaattcaggagggagatcttggccatgaatagggatacaacccggaatctgaatagggtcggtgtgatctttgt |
225 |
Q |
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|||| | | ||| ||||||||||||||||| ||||| ||||||||||| ||||||| | |||||| |||||||||||||| || |||||||||||| |
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| T |
3718961 |
taaggaacgcaagaacgatcatgaaaaaattcgggaggaagatcttggcctcgaataggtagacaacctggaatctgaataggatcaatgtgatctttgt |
3718862 |
T |
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| Q |
226 |
at |
227 |
Q |
| |
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|| |
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| T |
3718861 |
at |
3718860 |
T |
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