View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16171_low_15 (Length: 215)
Name: NF16171_low_15
Description: NF16171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16171_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 43352633 - 43352466
Alignment:
| Q |
17 |
aataaggaagaagaaaaaagaaatgtatgcattccagaatctagatatgtattagaaacttaatttcaacagatttgttacacgtccatgactatattgc |
116 |
Q |
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| T |
43352633 |
aataaggaagaagaaaaaagaaatgtatgcattccaaaatctagatctatagtagaaacttaatttcaacagatttgttacacgtccatgactatattgc |
43352534 |
T |
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| Q |
117 |
aaacatatgcttcattataacatctttatagataaaaactatagaacaccatcaattaattgcaaaca |
184 |
Q |
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| T |
43352533 |
aaacatatgcttcattataacatctttttagataaaaactatacaacaccatcaattaattgcaaaca |
43352466 |
T |
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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 87 - 164
Target Start/End: Complemental strand, 45059970 - 45059892
Alignment:
| Q |
87 |
agatttgttacacgtccatgactatattgca-aacatatgcttcattataacatctttatagataaaaactatagaaca |
164 |
Q |
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||||||||||||| ||||||| |||||| || ||||||||||| || ||||||||||| ||||||||| ||||| |||| |
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| T |
45059970 |
agatttgttacacttccatgattatattacataacatatgctttatcataacatctttttagataaaatctatacaaca |
45059892 |
T |
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