View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16171_low_3 (Length: 385)
Name: NF16171_low_3
Description: NF16171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16171_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 21285135 - 21284759
Alignment:
| Q |
1 |
ctaatacccattaaggattgagtcccaaaaattggaactaaccccaaaaaagggggttaattctattgttgaccacaaaaggcttcattaaggaatctgg |
100 |
Q |
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| T |
21285135 |
ctaatacccattaaggattgagtcccaaaaattggaactaaccccaaaaaatggggttaattctattgttgaccacaaaaggcttcattaaggaatctgg |
21285036 |
T |
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| Q |
101 |
attaccaaaatttgcccaggaacggacatgtactacaatgataattgtttaaaaaattaaatgaggaaaacatagaatttgatgaaaaccacatggctat |
200 |
Q |
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| T |
21285035 |
attaccaaaatttgcccaggaacggacatgtactacaatgataattgtttaaaaaattaaatgaggaaaacatagaatttgatgaaaaccacatggctat |
21284936 |
T |
|
| Q |
201 |
cacataaaa-taattggtgatgtagagttctattaaccacctcataacattacacctagtgcataacagtaaagaccaacttatgcctgttgaagtaaaa |
299 |
Q |
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| T |
21284935 |
cacataaaattaattggtgatgtagagttctattaaccacctcataacattacacctagtgtataacagtaaagaccaacttatgcctgttgaagtaaaa |
21284836 |
T |
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| Q |
300 |
accatgtaaaagatcatatgtagctcaatggtcctgtttctgctgtatggaaatttttgcccttacttcttctcact |
376 |
Q |
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| T |
21284835 |
accatgtaaaagatcatatgtagctcaatggtcctgtttctgctgtatggaaatttttgcccttacttcttctcact |
21284759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 128 - 259
Target Start/End: Complemental strand, 43765247 - 43765119
Alignment:
| Q |
128 |
atgtactacaatgataattgtttaaaaaattaaatgaggaaaacatagaatttgatgaaaaccacatggctatcacataaaat-aattggtgatgtagag |
226 |
Q |
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|||| ||| |||||||||||| |||||| | |||||||| | ||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
43765247 |
atgtcctagaatgataattgtgtaaaaagt-aaatgaggta--catagaatt-gatgaaaacaacatggctatcacataaaattaattggtgatgtagag |
43765152 |
T |
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| Q |
227 |
ttctattaaccacctcataacattacacctagt |
259 |
Q |
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| T |
43765151 |
ttctattaaccaccgcataatattacacctagt |
43765119 |
T |
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