View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16171_low_6 (Length: 326)
Name: NF16171_low_6
Description: NF16171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16171_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 285
Target Start/End: Original strand, 5051803 - 5052070
Alignment:
| Q |
18 |
atcatctgataagttctccatgttgattgtagtatatattgctaatagattgtatgttcacgagctattacctaccaaattttaattggataatggattt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
5051803 |
atcatctgataagttctccatgttgattgtagtatatattgctaatagattgtatgttcacgagctattacctaccaaatttaaattggataattgattc |
5051902 |
T |
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| Q |
118 |
tgatacttagttgaacaattatgatagccctttgcccaactgttaaattatgtattattgctgacttgattgatcccggccccaatcacgaggagaagat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
5051903 |
tgatacttagttgaacaattatgatagccctttgcccaactgtcaaattatgtattgttgctgacttgattgatcccggccccgatcacgaggagaagat |
5052002 |
T |
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| Q |
218 |
tgaggggacatgacatttgatatctattagttgtgtactttaaccccctcattccctttacttactgc |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5052003 |
tgaggggacatgacatttgatatctattagttgtgtactttaaccccctcattccctttacttactgc |
5052070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 51273565 - 51273452
Alignment:
| Q |
18 |
atcatctgataagttctccatgttgattgtagtatatattgctaatagattgt-atgttcacgagctattacctaccaaattttaattggataatggatt |
116 |
Q |
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|||||||||||| ||||||||||||||| ||||||||||||||| | ||||| ||||||| ||||||| | ||||||||||||||||||||||| |||| |
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| T |
51273565 |
atcatctgataaattctccatgttgattttagtatatattgctagaatattgttatgttcaagagctataagctaccaaattttaattggataatcgatt |
51273466 |
T |
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| Q |
117 |
ttgatacttagttg |
130 |
Q |
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| T |
51273465 |
ctgatacttggttg |
51273452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 14907642 - 14907599
Alignment:
| Q |
18 |
atcatctgataagttctccatgttgattgtagtatatattgcta |
61 |
Q |
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|||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
14907642 |
atcatctgataaattctccatgttgatttaagtatatattgcta |
14907599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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