View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16171_low_8 (Length: 281)
Name: NF16171_low_8
Description: NF16171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16171_low_8 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 15 - 281
Target Start/End: Complemental strand, 13871743 - 13871478
Alignment:
| Q |
15 |
tatactaatgatataatacttcttgtatgtccttttcagattggagatgtcaagggtctacttggacttttaatggttaccatacaaacgttgagagaga |
114 |
Q |
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| T |
13871743 |
tatactaatgatataatacttcttgtatgtccttttcagattggagatgtcaagggtctacttggacttttaatggttaccatacaaactttgagagaga |
13871644 |
T |
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| Q |
115 |
aattgaaaatacttgatgtttcttatggaactggaacaggtaactcgtgcaactaagtaattttttgtcaaattcaaaatccgttttacattctgcacnn |
214 |
Q |
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| T |
13871643 |
aattgaaaatacttgatgtttcttatggaactggaacaggtaactcgtgcaactaagtaattttttgtcaaattcaaaatccgttttacattctgcac-t |
13871545 |
T |
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| Q |
215 |
nnnnncagtacaatcaaatactgtttcataatgtatgtcccatttcagctaatacaggtcttgtata |
281 |
Q |
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| T |
13871544 |
tttttcagtacaatcaaatactgtttcataatgtatgtcccatttcagctaatacaggtcttgtata |
13871478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 15 - 196
Target Start/End: Complemental strand, 13852867 - 13852688
Alignment:
| Q |
15 |
tatactaatgatataatacttcttgtatgtccttttcagattggagatgtcaagggtctacttggacttttaatggttaccatacaaacgttgagagaga |
114 |
Q |
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| T |
13852867 |
tatactaaagatat--tacttcttgtatgtccttttcagattggagatgtcaagggtctacttggacttttaatggttaccatacaaacgttgagagaaa |
13852770 |
T |
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| Q |
115 |
aattgaaaatacttgatgtttcttatggaactggaacaggtaactcgtgcaactaagtaattttttgtcaaattcaaaatcc |
196 |
Q |
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| T |
13852769 |
agttgaaaatacttgatgtttcttatggaactggaacaggtaacttgttcaactaggtaattttttgtcaaattcaaaatcc |
13852688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 34 - 196
Target Start/End: Complemental strand, 13894179 - 13894019
Alignment:
| Q |
34 |
ttcttgtatgtccttttcagattggagatgtcaagggtctacttggacttttaatggttaccatacaaacgttgagagagaaattgaaaatacttgatgt |
133 |
Q |
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| T |
13894179 |
ttcttgtatgtcatttccaggttggagatatcaagggtctacttggagttttaatggtaaccatacaaatattgagagaaaaattgaaaatacttgatgt |
13894080 |
T |
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| Q |
134 |
ttcttatggaactggaacaggtaactcgtgcaactaagtaattttttgtcaaattcaaaatcc |
196 |
Q |
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| T |
13894079 |
gtcttatggaactggaacaggtaaattatgcaa--atgtaactttttgtcaaattcaaaatcc |
13894019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 191
Target Start/End: Complemental strand, 13901449 - 13901294
Alignment:
| Q |
33 |
cttcttgtatgtccttttcagattggagatgtcaagggtctacttggacttttaatggttaccatacaaacgttgagagagaaattgaaaatacttgatg |
132 |
Q |
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| T |
13901449 |
cttcttgtatgccattttcagattggagatatgaaaggtctatttggactgttaatggttaacatgcaaatgttgcgagctaaattgaaagtagtggacg |
13901350 |
T |
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| Q |
133 |
tttcttatggaactggaacaggtaactcgtgcaactaagtaattttttgtcaaattcaa |
191 |
Q |
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| T |
13901349 |
tttcttatggacatggaacaggtaacttttg---ctatgtagttttttgtcaaattcaa |
13901294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 281
Target Start/End: Complemental strand, 13852623 - 13852585
Alignment:
| Q |
243 |
taatgtatgtcccatttcagctaatacaggtcttgtata |
281 |
Q |
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| T |
13852623 |
taatgtatgtcccatttcagcaaatacaggtcttgtata |
13852585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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