View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16171_low_9 (Length: 267)

Name: NF16171_low_9
Description: NF16171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16171_low_9
NF16171_low_9
[»] chr5 (6 HSPs)
chr5 (15-256)||(35755558-35755799)
chr5 (44-256)||(35426127-35426339)
chr5 (35-193)||(35377231-35377389)
chr5 (37-150)||(35367670-35367783)
chr5 (37-256)||(35411373-35411592)
chr5 (103-256)||(35371215-35371368)
[»] chr8 (2 HSPs)
chr8 (82-256)||(15294445-15294619)
chr8 (82-256)||(15474814-15474988)
[»] chr1 (2 HSPs)
chr1 (66-256)||(10419848-10420038)
chr1 (35-169)||(10414931-10415065)
[»] chr7 (1 HSPs)
chr7 (57-256)||(29622507-29622706)
[»] chr3 (1 HSPs)
chr3 (91-200)||(1154445-1154554)
[»] chr2 (3 HSPs)
chr2 (97-194)||(30663745-30663842)
chr2 (97-194)||(30672425-30672522)
chr2 (97-194)||(30626819-30626916)


Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 15 - 256
Target Start/End: Complemental strand, 35755799 - 35755558
Alignment:
Q  15 agtagtaatggtttgggaaagtaacttctgtttaatttcaagcaacttaattataacctcttttgtgagcattctctgagtaggaaattcttcagaacat 114  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  35755799 agtagtaatggtttaggaaagtaacttctgtttaatttcaagcaacttaattataacatcttttgtgagcattctctgagtaggaaattcttcagaacat 35755700  T
Q  115 gcaactcctattttagcaaacatcactagacactcctttatgttgttttccacaactcgtgtctgatcttcaacaaatggaataaggcaacgggaatcta 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  35755699 gcaactcctattttagcaaacatcactagacactcctttatgttgttttccacaactcgtgtctgatcttcaaccaatggaataaggcaacgggaatcta 35755600  T
Q  215 caacctcaagaatttcttcagtaattctcatcttacagaatt 256  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  35755599 caacctcaagaatttcttcaggaattctcatcttacagaatt 35755558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 44 - 256
Target Start/End: Complemental strand, 35426339 - 35426127
Alignment:
Q  44 gtttaatttcaagcaacttaattataacctcttttgtgagcattctctgagtaggaaattcttcagaacatgcaactcctattttagcaaacatcactag 143  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||     
T  35426339 gtttaatttcaagcaacttaactataacatcttttgtgagcattctctgagtaggaaattcttcagaacatgcaattcctattttagcaaacatcactaa 35426240  T
Q  144 acactcctttatgttgttttccacaactcgtgtctgatcttcaacaaatggaataaggcaacgggaatctacaacctcaagaatttcttcagtaattctc 243  Q
    ||||||||||||||||||||||| |||| |||| ||||||||| ||||||  |||||  | |  ||||| || || ||||||||| |||||| |||||||    
T  35426239 acactcctttatgttgttttccataacttgtgtttgatcttcagcaaatgacataagcaagcatgaatccactacatcaagaattccttcaggaattctc 35426140  T
Q  244 atcttacagaatt 256  Q
    |||||||||||||    
T  35426139 atcttacagaatt 35426127  T

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Target: chr5; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 35 - 193
Target Start/End: Complemental strand, 35377389 - 35377231
Alignment:
Q  35 gtaacttctgtttaatttcaagcaacttaattataacctcttttgtgagcattctctgagtaggaaattcttcagaacatgcaactcctattttagcaaa 134  Q
    |||| ||||||||||||||||||||||| | |||||  |||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||    
T  35377389 gtaatttctgtttaatttcaagcaacttcactataatatcttttgtgagcattctctgagtagggaattcttcagaacatgcaattcctatattagcaaa 35377290  T
Q  135 catcactagacactcctttatgttgttttccacaactcgtgtctgatcttcaacaaatg 193  Q
    |||||||||||||||||||||| |  ||||||||||   ||| ||||||||||||||||    
T  35377289 catcactagacactcctttatgctactttccacaacctttgtttgatcttcaacaaatg 35377231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 37 - 150
Target Start/End: Complemental strand, 35367783 - 35367670
Alignment:
Q  37 aacttctgtttaatttcaagcaacttaattataacctcttttgtgagcattctctgagtaggaaattcttcagaacatgcaactcctattttagcaaaca 136  Q
    |||||||| |||||||| |||||||| | | |||| | |||| | | |||||  |||||||| |||||||| ||||||||||||||||||||||||||||    
T  35367783 aacttctgcttaatttccagcaacttcactgtaacattttttatcaacattcgatgagtagggaattcttcggaacatgcaactcctattttagcaaaca 35367684  T
Q  137 tcactagacactcc 150  Q
    ||||||||||||||    
T  35367683 tcactagacactcc 35367670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 256
Target Start/End: Complemental strand, 35411592 - 35411373
Alignment:
Q  37 aacttctgtttaatttcaagcaacttaattataacctcttttgtgagcattctctgagtaggaaattcttcagaacatgcaactcctattttagcaaaca 136  Q
    ||||||| ||| ||||||||||||||||  ||||| |||||| | | |||||  |||| |||||| || ||||| ||||||||||| ||| |||||||||    
T  35411592 aacttcttttttatttcaagcaacttaacgataacatcttttatcaacattcgatgagcaggaaactcgtcagagcatgcaactccgattctagcaaaca 35411493  T
Q  137 tcactagacactcctttatgttgttttccacaactcgtgtctgatcttcaacaaatggaataaggcaacgggaatctacaacctcaagaatttcttcagt 236  Q
    |||| | ||| | | | || |||||||||||||  | ||||| ||||||| ||||||| | |||  || | |||||||| | |||||| ||| |||| |     
T  35411492 tcaccaaacaattcctaatcttgttttccacaatccctgtctcatcttcagcaaatggtaaaagcaaatgtgaatctactatctcaaggattccttctga 35411393  T
Q  237 aattctcatcttacagaatt 256  Q
    |||| |||| || |||||||    
T  35411392 aattttcattttgcagaatt 35411373  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 103 - 256
Target Start/End: Complemental strand, 35371368 - 35371215
Alignment:
Q  103 tcttcagaacatgcaactcctattttagcaaacatcactagacactcctttatgttgttttccacaactcgtgtctgatcttcaacaaatggaataaggc 202  Q
    |||||||||||||||||||| |||  |||||||||||| | ||| | | | || |||||||||||||  | ||| | ||||||| ||||||| | |||      
T  35371368 tcttcagaacatgcaactccaattgcagcaaacatcaccaaacaattcctaatcttgttttccacaatccctgtatcatcttcagcaaatggtaaaagca 35371269  T
Q  203 aacgggaatctacaacctcaagaatttcttcagtaattctcatcttacagaatt 256  Q
    || | |||||||| | |||||| ||| |||| | |||| |||| || |||||||    
T  35371268 aatgtgaatctactatctcaaggattccttctggaattttcattttgcagaatt 35371215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 82 - 256
Target Start/End: Complemental strand, 15294619 - 15294445
Alignment:
Q  82 agcattctctgagtaggaaattcttcagaacatgcaactcctattttagcaaacatcactagacactcctttatgttgttttccacaactcgtgtctgat 181  Q
    ||||||| | |||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| || || ||||||||||   ||||||||    
T  15294619 agcattcaccgagttggaaattcatcagaacatgcaactcctattttagcaaacatcactagacattcctttttgctgctttccacaacctttgtctgat 15294520  T
Q  182 cttcaacaaatggaataaggcaacgggaatctacaacctcaagaatttcttcagtaattctcatcttacagaatt 256  Q
    ||||||| ||||||||||| ||| | ||| | || | |||||||||| |||| | |||| |||||||||| ||||    
T  15294519 cttcaaccaatggaataagccaatgagaacccactatctcaagaattccttctggaattttcatcttacaaaatt 15294445  T

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Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 82 - 256
Target Start/End: Complemental strand, 15474988 - 15474814
Alignment:
Q  82 agcattctctgagtaggaaattcttcagaacatgcaactcctattttagcaaacatcactagacactcctttatgttgttttccacaactcgtgtctgat 181  Q
    ||||||| | |||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| || || ||||||||||   ||||||||    
T  15474988 agcattcaccgagttggaaattcatcagaacatgcaactcctattttagcaaacatcactagacattcctttttgctgctttccacaacctttgtctgat 15474889  T
Q  182 cttcaacaaatggaataaggcaacgggaatctacaacctcaagaatttcttcagtaattctcatcttacagaatt 256  Q
    ||||||| ||||||||||| ||| | ||| | || | |||||||||| |||| | |||| |||||||||| ||||    
T  15474888 cttcaaccaatggaataagccaatgagaacccactatctcaagaattccttctggaattttcatcttacaaaatt 15474814  T

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Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 66 - 256
Target Start/End: Original strand, 10419848 - 10420038
Alignment:
Q  66 tataacctcttttgtgagcattctctgagtaggaaattcttcagaacatgcaactcctattttagcaaacatcactagacactcctttatgttgttttcc 165  Q
    |||||| ||||||||||||| ||  |||||||  |||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||    
T  10419848 tataacatcttttgtgagcactcgatgagtagcgaattcttcggaacatgcaactcctatttcagcaaacatcactagacactccttaatgtttttttcc 10419947  T
Q  166 acaactcgtgtctgatcttcaacaaatggaataaggcaacgggaatctacaacctcaagaatttcttcagtaattctcatcttacagaatt 256  Q
       | | |||||||||||| |  |||||| |||||  || | ||||| || | ||||||||||||| ||| |||| |||||||||||||||    
T  10419948 gtcattagtgtctgatctttaggaaatggcataagcaaatgtgaatccactatctcaagaatttctacaggaattttcatcttacagaatt 10420038  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 169
Target Start/End: Original strand, 10414931 - 10415065
Alignment:
Q  35 gtaacttctgtttaatttcaagcaacttaattataacctcttttgtgagcattctctgagtaggaaattcttcagaacatgcaactcctattttagcaaa 134  Q
    |||| |||||||| |||||||| ||||||  |||||| |||||| | | |||||  |||| ||||| ||||||||||||||||||||| |||  | ||||    
T  10414931 gtaatttctgttttatttcaaggaacttatctataacatcttttatcaacattcgatgagaaggaacttcttcagaacatgcaactccgattgcaccaaa 10415030  T
Q  135 catcactagacactcctttatgttgttttccacaa 169  Q
    |||||| | ||||| ||| || || ||||||||||    
T  10415031 catcaccaaacacttcttaatcttattttccacaa 10415065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 57 - 256
Target Start/End: Original strand, 29622507 - 29622706
Alignment:
Q  57 caacttaattataacctcttttgtgagcattctctgagtaggaaattcttcagaacatgcaactcctattttagcaaacatcactagacactcctttatg 156  Q
    |||||||| |||||| |||||| | |||||||  |||| |||||| |||| ||||||||||||||| ||| ||||||||||||| | ||| | | | ||     
T  29622507 caacttaactataacatcttttattagcattcgatgagcaggaaactcttgagaacatgcaactccaattctagcaaacatcaccaaacaattcctaatc 29622606  T
Q  157 ttgttttccacaactcgtgtctgatcttcaacaaatggaataaggcaacgggaatctacaacctcaagaatttcttcagtaattctcatcttacagaatt 256  Q
    |||||||||||||  | |||| |||||||| ||||||| |||||  |||||||||| || | |||||||||| |||| | |||  |||||||||||||||    
T  29622607 ttgttttccacaatccctgtccgatcttcagcaaatggtataagtaaacgggaatccactatctcaagaattccttctggaatcttcatcttacagaatt 29622706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 91 - 200
Target Start/End: Complemental strand, 1154554 - 1154445
Alignment:
Q  91 tgagtaggaaattcttcagaacatgcaactcctattttagcaaacatcactagacactcctttatgttgttttccacaactcgtgtctgatcttcaacaa 190  Q
    |||| |||||| ||||||| |||||||||||| ||| ||||||||||||| | |||||  || || ||||||||||||| |  |||||||||||| ||||    
T  1154554 tgagcaggaaactcttcagtacatgcaactccaattctagcaaacatcaccaaacactttttaatcttgttttccacaatttctgtctgatcttcgacaa 1154455  T
Q  191 atggaataag 200  Q
    | || |||||    
T  1154454 acggcataag 1154445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 194
Target Start/End: Complemental strand, 30663842 - 30663745
Alignment:
Q  97 ggaaattcttcagaacatgcaactcctattttagcaaacatcactagacactcctttatgttgttttccacaactcgtgtctgatcttcaacaaatgg 194  Q
    ||||| |||||||||||||||||||| ||| |||||||||||||||  || | | | || |||||||||||||  | ||||| ||||||| |||||||    
T  30663842 ggaaactcttcagaacatgcaactccaattatagcaaacatcactaagcaattcctaatcttgttttccacaatccctgtctcatcttcagcaaatgg 30663745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 194
Target Start/End: Complemental strand, 30672522 - 30672425
Alignment:
Q  97 ggaaattcttcagaacatgcaactcctattttagcaaacatcactagacactcctttatgttgttttccacaactcgtgtctgatcttcaacaaatgg 194  Q
    ||||| |||||||||||||||||||| ||| |||||||||||||||  || | | | || |||||||||||||  | ||||| ||||||| |||||||    
T  30672522 ggaaactcttcagaacatgcaactccaattatagcaaacatcactaagcaattcctaatcttgttttccacaatccctgtctcatcttcagcaaatgg 30672425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 194
Target Start/End: Complemental strand, 30626916 - 30626819
Alignment:
Q  97 ggaaattcttcagaacatgcaactcctattttagcaaacatcactagacactcctttatgttgttttccacaactcgtgtctgatcttcaacaaatgg 194  Q
    ||||| ||||| |||||||||||||| ||| |||||||||||||||  || | | | || |||||||||||||  | ||||| ||||||| |||||||    
T  30626916 ggaaactcttctgaacatgcaactccaattatagcaaacatcactaagcaattcctaatcttgttttccacaatccctgtctcatcttcagcaaatgg 30626819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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