View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16172_high_13 (Length: 411)
Name: NF16172_high_13
Description: NF16172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16172_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 10 - 393
Target Start/End: Original strand, 13268581 - 13268964
Alignment:
| Q |
10 |
caagaatataacacagtaagataataaaactaaaaatcttatataccttccattgtctagctttctcaagctcaataatatcagcaatttcagggtcaat |
109 |
Q |
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| T |
13268581 |
caagaaaataacacagtaagataataaaactaaaaatcttatataccttccattgtctagctttctcaagctcaataatatcagcaatttcagggtcaat |
13268680 |
T |
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| Q |
110 |
ttcctcaagtgaagaattcaattgctttggccactgcaaaagtaataagatatttcaaatctaatcaaaaaccttcacaatcataacaatcaaatccaaa |
209 |
Q |
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| T |
13268681 |
ttcctcaagtgaagaattcaattgctttggccactgcaaaagtaataacatatttcaaatctaatcaaaaaccttcacaatcataacaatcaaatccaaa |
13268780 |
T |
|
| Q |
210 |
agtctcttttctaacatgaaacatattaatatccggtgcatcttttggattaacggtaagtttgacataatcacaatatgtcacactttgaagtttcaac |
309 |
Q |
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| T |
13268781 |
agtctcttttctaacatgaaacatattaatatccggtgcatcttttggattaatggtaagtttggcataaccataatatgtcccagtttgaagtttcaac |
13268880 |
T |
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| Q |
310 |
aaaatcatgtgtcaccacgattttgtcaaactcaccgtgattccaaacatgtacgtagtcattgatatattatcataaattata |
393 |
Q |
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| T |
13268881 |
aaaatcatgtgttaccgcgattttgtcaaactcaccgtgattccaaacatgtacgtagtcattgatatattatcataaattata |
13268964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 328 - 363
Target Start/End: Original strand, 26533210 - 26533245
Alignment:
| Q |
328 |
gattttgtcaaactcaccgtgattccaaacatgtac |
363 |
Q |
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| T |
26533210 |
gattttgtcaaactcaccgtaattccaaacatgtac |
26533245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 360
Target Start/End: Complemental strand, 11271795 - 11271727
Alignment:
| Q |
292 |
acactttgaagtttcaacaaaatca-tgtgtcaccacgattttgtcaaactcaccgtgattccaaacatg |
360 |
Q |
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| T |
11271795 |
acactttggagctttatcaaaatcactgtgacaccatgattttgtcaaactcaccgt-attccaaacatg |
11271727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 363
Target Start/End: Original strand, 7552423 - 7552467
Alignment:
| Q |
319 |
tgtcaccacgattttgtcaaactcaccgtgattccaaacatgtac |
363 |
Q |
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| T |
7552423 |
tgtcaccttgatattgtcaaactcaccgcgattccaaacatgtac |
7552467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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