View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16172_high_16 (Length: 355)
Name: NF16172_high_16
Description: NF16172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16172_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 16 - 345
Target Start/End: Complemental strand, 19890277 - 19889948
Alignment:
| Q |
16 |
cactagtacaggcttttcagtaattgttggtggcagatcatctctggacaattcaacttcaccactttcatcagctatggttaaatttataacatgatct |
115 |
Q |
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| T |
19890277 |
cactagtacaggcttttcagtaattgttggtggcatatcatctctggacagttcaacttcaccattttcatcagctatggttaaatttataacatgatct |
19890178 |
T |
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| Q |
116 |
aatggttgactttgatagggttcttgggcagttgaatttgacccttctttcatattaaagaagtctctaggaacagtactcataacataattcctatttt |
215 |
Q |
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| T |
19890177 |
aatggttgactttgatagggttcttgggcatttaaatttgacccttctttcatattaaagaagtctctaggaacagtactcataacataattcctatttt |
19890078 |
T |
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| Q |
216 |
cattgtagggatcttgaacgtagaagcattggtggatttgagaggccaacacaaaaggatcatctttataacatcttttattaaactggacacaagtcat |
315 |
Q |
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| T |
19890077 |
cattgtagggatcttgaacgtagaagcattggtggacttgagaggccaacacaaaaggatcaactttataacatcttttattaaactggacacaagtcat |
19889978 |
T |
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| Q |
316 |
cccatactttgttttgtcttcaacttcata |
345 |
Q |
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| T |
19889977 |
cccatacttttttttgtcttcaacttcata |
19889948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 55 - 345
Target Start/End: Complemental strand, 24242295 - 24242004
Alignment:
| Q |
55 |
atctctggacaattcaacttcaccactttcatcagctatggttaaatttataacatgatctaatggttgactttgatagggttcttgggcagttgaattt |
154 |
Q |
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| T |
24242295 |
atctctggacaattcaacttcaccattttcatcagctatggttaaatttataacatgatctaatggttgactttgataaggttcttgggcatttgaattt |
24242196 |
T |
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| Q |
155 |
gacccttctttcatattaaagaagtctctaggaacagtactcataacataattcctattttcattgtagggatcttgaacgtagaagcattggtggattt |
254 |
Q |
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| T |
24242195 |
gacccttttttcatattaaagaagtctctaggaacaatactcataacataattcctattttcattgtagggatcttgaacgtagaagcattggtggactt |
24242096 |
T |
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| Q |
255 |
gagaggccaacacaaaaggatcatctttataacatcttttattaaactggacacaagtcatcccatac-tttgttttgtcttcaacttcata |
345 |
Q |
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| T |
24242095 |
gagaggccaacacaaaaggatcatctttataacatcttttattaaattggacacaagtcgtcccatactttttttttgtcttcaacttcata |
24242004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 258
Target Start/End: Original strand, 23491999 - 23492087
Alignment:
| Q |
170 |
ttaaagaagtctctaggaacagtactcataacataattcctattttcattgtagggatcttgaacgtagaagcattggtggatttgaga |
258 |
Q |
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| T |
23491999 |
ttaaacaaatctctcggcacagtcttcataacataatgtttattttcattgtagggatcttggacataaaaacattggtggacttgaga |
23492087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 321
Target Start/End: Complemental strand, 13253177 - 13253080
Alignment:
| Q |
224 |
ggatcttgaacgtagaagcattggtggatttgagaggccaacacaaaaggatcatctttataacatcttttattaaactggacacaagtcatcccata |
321 |
Q |
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| T |
13253177 |
ggatctttaacgtagaaacattggtggacttgagaagcaaatacaaaaggatcgtccatgtaacatctcttgttgaaataaacacaagtcaacccata |
13253080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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