View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16172_high_2 (Length: 779)
Name: NF16172_high_2
Description: NF16172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16172_high_2 |
 | |
|
| [»] scaffold0009 (4 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 665; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 665; E-Value: 0
Query Start/End: Original strand, 18 - 763
Target Start/End: Complemental strand, 28284369 - 28283632
Alignment:
| Q |
18 |
acagtgatagtagcacaggcaagaaaaagtgtatcagatgctgatttatactcatttgtgcattgtgatgttactggaactggatctaccactttcttag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28284369 |
acagtgatagtagcacaggcaagaaaaagtgtatcagatgctgatttatactcatttgtgcattgtgatgttactggaactggatctaccactttcttag |
28284270 |
T |
|
| Q |
118 |
ccagagcatggatgacttatcctaaaattatctttgcttactcaactatgagtaatgttgttgatcccaaaggatgggataacaccttgcaccctgaatt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||| |
|
|
| T |
28284269 |
ccagagcatggatgacttatcctaaaattatctttgcttactcaactatgagtaatgttgttgatcctaaagggtgggataacaccatgcaccctgaatt |
28284170 |
T |
|
| Q |
218 |
tgacaagtaaattccttaattcaactttgcagttctgcattttaatgatatatattcatccattagaatatgttagtgt--atatatatcattttaggtt |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28284169 |
tgacaagtaaattccttaattcaactttgcagttctgcatttttatgatatatattcatccattagaatatgttagtgtgtatatatatcattttaggtt |
28284070 |
T |
|
| Q |
316 |
aaatatatttttaacattaatacattatgctattcacagaacttcatactttggagaatatcagaacacaggaccaaagtcagatcccaaaggacgtgca |
415 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28284069 |
aaatatatttttaacattaatacattatgttattcacagaacttcatactttggagaatatcagaacacaggaccaaagtcagatcccaaaggacgtgca |
28283970 |
T |
|
| Q |
416 |
actgtcggaaaacaactaagtgcagcagaggttaaacctttcattacgcttggaatgattcaaggatctaaatggctccttcctcctccaaaagtctaat |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28283969 |
actgtcggaaaacaactaagtgcagcagaggttaaacctttcattacgcttggaatgattcaaggatctaaatggctccttcctcctccaaaagtctaat |
28283870 |
T |
|
| Q |
516 |
taatgtggcttgaagagttttgtcgtgcaccccgcattttagtgagtggtgaatctgtagaatcatctccaacaacattttcttcttgtgtttctccaac |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28283869 |
taatgtggcttgaagagttttgtcgtgcaccccgcattttagtgagtggtgaatctgtagaatcatctccaacaacattttcttcttgtgtttctccaac |
28283770 |
T |
|
| Q |
616 |
aacattattagctaatatcattaagctttggccattattagctaaagcgtctacaacaacatttccttctctatgcatatgggtacggtgacactcaata |
715 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
28283769 |
aacattattagctaatatcattaagctttggccattattagctaaagcatctacaacaacatttccttctctatgtatatgggtac-----cac-----c |
28283680 |
T |
|
| Q |
716 |
cactcaatacttcttagagtagtcttgcaattcatccacctatttctt |
763 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28283679 |
cactcaatacttcttagagtagtcttgcaattcatccacctatttctt |
28283632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 150; Significance: 7e-79; HSPs: 4)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 150; E-Value: 7e-79
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 173388 - 173597
Alignment:
| Q |
18 |
acagtgatagtagcacaggcaagaaaaagtgtatcagatgctgatttatactcatttgtgcattgtgatgttactggaactggatctaccactttcttag |
117 |
Q |
| |
|
||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
173388 |
acagtgatagtagcacaagcaagaaaaactgcatcagatgctgatttatactcatttgtgcattgtgatattactggaactggatcttccactttcttag |
173487 |
T |
|
| Q |
118 |
ccagagcatggatgacttatcctaaaattatctttgcttactcaactatgagtaatgttgttgatcccaaaggatgggataacaccttgcaccctgaatt |
217 |
Q |
| |
|
| || ||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||| |||||||||| ||||||||| || ||||||||||||| |
|
|
| T |
173488 |
ctagggcatggatgacttatcccaaaattatctatgcttactcaactatgaccaatgttgttaatcccaaagggtgggataacgccatgcaccctgaatt |
173587 |
T |
|
| Q |
218 |
tgacaagtaa |
227 |
Q |
| |
|
|||||||||| |
|
|
| T |
173588 |
tgacaagtaa |
173597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 150; E-Value: 7e-79
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 178901 - 179110
Alignment:
| Q |
18 |
acagtgatagtagcacaggcaagaaaaagtgtatcagatgctgatttatactcatttgtgcattgtgatgttactggaactggatctaccactttcttag |
117 |
Q |
| |
|
||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
178901 |
acagtgatagtagcacaagcaagaaaaactgcatcagatgctgatttatactcatttgtgcattgtgatattactggaactggatcttccactttcttag |
179000 |
T |
|
| Q |
118 |
ccagagcatggatgacttatcctaaaattatctttgcttactcaactatgagtaatgttgttgatcccaaaggatgggataacaccttgcaccctgaatt |
217 |
Q |
| |
|
| || ||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||| |||||||||| ||||||||| || ||||||||||||| |
|
|
| T |
179001 |
ctagggcatggatgacttatcccaaaattatctatgcttactcaactatgaccaatgttgttaatcccaaagggtgggataacgccatgcaccctgaatt |
179100 |
T |
|
| Q |
218 |
tgacaagtaa |
227 |
Q |
| |
|
|||||||||| |
|
|
| T |
179101 |
tgacaagtaa |
179110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #3
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 349 - 521
Target Start/End: Original strand, 174316 - 174488
Alignment:
| Q |
349 |
tcacagaacttcatactttggagaatatcagaacacaggaccaaagtcagatcccaaaggacgtgcaactgtcggaaaacaactaagtgcagcagaggtt |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||| | ||| ||||||| || |||||||||| |
|
|
| T |
174316 |
tcacagaacttcatactttggagaatatcagaacacaggaccaaagtcagatcctaaagggcgtgcaagtgttgcaaagcaactaactgaagcagaggtt |
174415 |
T |
|
| Q |
449 |
aaacctttcattacgcttggaatgattcaaggatctaaatggctccttcctcctccaaaagtctaattaatgt |
521 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
174416 |
aaacctttcattacacttggaatgattcaagcatctaaatggctccttcctcctccaaaagtctaattaatgt |
174488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #4
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 349 - 521
Target Start/End: Original strand, 179829 - 180001
Alignment:
| Q |
349 |
tcacagaacttcatactttggagaatatcagaacacaggaccaaagtcagatcccaaaggacgtgcaactgtcggaaaacaactaagtgcagcagaggtt |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||| | ||| ||||||| || |||||||||| |
|
|
| T |
179829 |
tcacagaacttcatactttggagaatatcagaacacaggaccaaagtcagatcctaaagggcgtgcaagtgttgcaaagcaactaactgaagcagaggtt |
179928 |
T |
|
| Q |
449 |
aaacctttcattacgcttggaatgattcaaggatctaaatggctccttcctcctccaaaagtctaattaatgt |
521 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
179929 |
aaacctttcattacacttggaatgattcaagcatctaaatggctccttcctcctccaaaagtctaattaatgt |
180001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 150; Significance: 7e-79; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 7e-79
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 31114434 - 31114225
Alignment:
| Q |
18 |
acagtgatagtagcacaggcaagaaaaagtgtatcagatgctgatttatactcatttgtgcattgtgatgttactggaactggatctaccactttcttag |
117 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||| |
|
|
| T |
31114434 |
acagtgatagtagcacaagcaagaaaaagtgcatcagatgctgatttatactcatttgtgcattgtgatattactggaactggaactactactttcttag |
31114335 |
T |
|
| Q |
118 |
ccagagcatggatgacttatcctaaaattatctttgcttactcaactatgagtaatgttgttgatcccaaaggatgggataacaccttgcaccctgaatt |
217 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||| |||||||||||||| | ||||||||||||| |
|
|
| T |
31114334 |
ctagagcatggatgacttatcctaaaattatctatgcttactcaactatgaccaatgttgttcatccaaaaggatgggataatggcatgcaccctgaatt |
31114235 |
T |
|
| Q |
218 |
tgacaagtaa |
227 |
Q |
| |
|
|||||||||| |
|
|
| T |
31114234 |
tgacaagtaa |
31114225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 331 - 569
Target Start/End: Complemental strand, 31114154 - 31113912
Alignment:
| Q |
331 |
attaatacattatgctattcacagaacttcatactttggagaatatcagaacacaggaccaaagtcagatcccaaaggacgtgcaactgtcggaaaacaa |
430 |
Q |
| |
|
||||||||||||| ||| |||||| |||||||||||||||||||| |||||||||||||| |||||||| ||||| |||| || | || ||| ||| |
|
|
| T |
31114154 |
attaatacattatcttatctgcagaacatcatactttggagaatatcaaaacacaggaccaaaatcagatccgaaagggcgtgtaagtatcacaaagcaa |
31114055 |
T |
|
| Q |
431 |
ctaagtgcagcagaggttaaacctttcattacgcttggaatgattcaaggatctaaatggctccttcctcctccaaaagtctaatta----atgtggctt |
526 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
31114054 |
ctaagtgaagcagaggttaaacctttcattacacttggaatgattcaaggatcaaaatggctccttcctcctccaaaagtctaattaatgtatgtggctt |
31113955 |
T |
|
| Q |
527 |
gaagagttttgtcgtgcaccccgcattttagtgagtggtgaat |
569 |
Q |
| |
|
|||||||||| | |||||||| |||||||||||||||||||| |
|
|
| T |
31113954 |
caagagttttgccttgcaccccacattttagtgagtggtgaat |
31113912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University