View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16172_high_26 (Length: 254)
Name: NF16172_high_26
Description: NF16172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16172_high_26 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 12 - 254
Target Start/End: Original strand, 33049327 - 33049569
Alignment:
| Q |
12 |
tgagatgaaattaccgtcgcgtttgaagatacaaacacgcttctgccttgcaaaacacaagaagcctctatgttcatcccaacaaaacgcattagcacct |
111 |
Q |
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| T |
33049327 |
tgagatgaaattaccgtcgcgtctgaagatacaaacacgcttctgcctcgcaaaacacaagaagcctctatgttcatcccaacaaaaagcatttgcacct |
33049426 |
T |
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| Q |
112 |
ttcgcttttgtaataacagcaatagtctcaaacgtaggaagtttatgaaacgcgatggattccgataacgaaagaagaaactctctcgattccaccacct |
211 |
Q |
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| T |
33049427 |
ttcgctttagtaataaccgcaatagtttcgaaggtaggaagtttatgaaacgcgatggattccgataacgaaagaagaaactctctcgattccaccacct |
33049526 |
T |
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| Q |
212 |
gcattgacaccacagccttcttagcgaatccttttacgtttct |
254 |
Q |
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| T |
33049527 |
gcaatgacaccacagccttctttgcgaatccatttacgtttct |
33049569 |
T |
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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 239
Target Start/End: Complemental strand, 7674366 - 7674212
Alignment:
| Q |
85 |
tcatcccaacaaaacgcattagcacctttcgcttttgtaataacagcaatagtctcaaacgtaggaagtttatgaaacgcgatggattccgataacgaaa |
184 |
Q |
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|||||||| |||||| ||||||| ||||| ||||| |||||||| || ||||| || || | || | | ||||||| ||||| ||||| || | ||| | |
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| T |
7674366 |
tcatcccagcaaaacacattagctcctttagctttcgtaataaccgctatagtttccaaacttggtaatctatgaaaagcgattgattcagaaagcgata |
7674267 |
T |
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| Q |
185 |
gaagaaactctctcgattccaccacctgcattgacaccacagccttcttagcgaa |
239 |
Q |
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| T |
7674266 |
gaagaagctctctcgattctacaacttccattgacacaacaggcttcttcgcgaa |
7674212 |
T |
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