View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16172_high_5 (Length: 571)
Name: NF16172_high_5
Description: NF16172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16172_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 459; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 16 - 555
Target Start/End: Original strand, 14424528 - 14425070
Alignment:
| Q |
16 |
attgcaacagaaatccaagagctcattgataacatgtccttgaa-cgagtatttccctcaaagcgagtataggggtgttgttaagaagcatggagttcca |
114 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14424528 |
attgcaatagaaatccaagagctcattgataacatgtccttgaaacgagtatttccctcaaagcgagtataggggtgttgttaagaagcatggagttcca |
14424627 |
T |
|
| Q |
115 |
aacttggaaacgcatgatgcattaatagcaagaaacaaacttcttagcaacaaaatcgaagcactaaccaagaagttggaagcgtaaaacgtggcaaagt |
214 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
14424628 |
aacttggaaatgcatgatgcattaatagcaagaaacaaacttcttagcaacaaaatcgaagcactagccaagaagttggaagcgtaaaacgtggcaaagt |
14424727 |
T |
|
| Q |
215 |
tgtcaaaaaatggt--aagttatgacttttttgagcaatctcataaaagtagtgcatgtcttccagcaagtttggggttatccaagaagcaagtaaaata |
312 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
14424728 |
tgtcaaaaaatggtgtaagttatgacttttttgagcaatctcataaaagtagtgcatgtcttccagaaagtttggggttatccaagaagcaagtaaaata |
14424827 |
T |
|
| Q |
313 |
catgggtgtgtacacgaggcaacaaagaaatccttattcaacacttgcaatccaggttagacagaacatctgaacttctcatggagaggaaacaattctc |
412 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
14424828 |
catgggtgtgtacacgaggcaacaaagaaatccttattcaacacttgcaatccagtgtagacaaaacatctgaacttctcatggagaggaaacaattctc |
14424927 |
T |
|
| Q |
413 |
ttaacccaccccaaacatcaaaccagcagccgcctaaaaagagattggaagaagtcctaacccaatacatgcaaacaacacaaagtcaaattgaagccat |
512 |
Q |
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|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
14424928 |
ttaacccacctcaaacatcaaaccagcatccgcctaaaaagagattggaagaagtcctaacccaatacatgcgaacaacacaaagtcaaattgaagccat |
14425027 |
T |
|
| Q |
513 |
ctcnnnnnnnttagaaataagctcagagaaataatgaagcatc |
555 |
Q |
| |
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||| | ||||||||||||||||||||||||||||||| |
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|
| T |
14425028 |
ctcaaaaaaatcagaaataagctcagagaaataatgaagcatc |
14425070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 75505 - 75362
Alignment:
| Q |
18 |
tgcaacagaaatccaagagctcattgataacatgtccttgaacgagtatttccctcaaagcgagtataggggtgttgttaagaagcatggagttccaaac |
117 |
Q |
| |
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||||||| ||||| |||| |||| || ||||||||||| |||| |||| ||| |||||||| ||| ||||||||| |||||||| ||||||| || |
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| T |
75505 |
tgcaacatgaatccgagagttcatagaaaacatgtccttaaacgtgtatcgtccttaaagcgagaatatgggtgttgtaaagaagcagggagttctaagt |
75406 |
T |
|
| Q |
118 |
ttggaaacgcatgatgcattaatagcaagaaacaaacttcttag |
161 |
Q |
| |
|
||| |||| |||||||| ||| | | ||| |||||||| ||||| |
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|
| T |
75405 |
ttgaaaactcatgatgccttactggtaagcaacaaactccttag |
75362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 26 - 294
Target Start/End: Original strand, 19292255 - 19292525
Alignment:
| Q |
26 |
aaatccaagagctcattgataacatgtccttgaacgagtatttccctcaaagcgagtataggggtgttgttaagaagcatggagttccaaacttggaaac |
125 |
Q |
| |
|
|||||| |||| ||||| | | ||||||||||||||||||| ||||||||||||| ||| |||||| ||||| ||||| ||||||| | ||| |||| |
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|
| T |
19292255 |
aaatccgagagttcatttacatcatgtccttgaacgagtatcgccctcaaagcgagaatatgggtgtggttaaaaagcaaggagttctatgtttgcaaac |
19292354 |
T |
|
| Q |
126 |
gcatgatgcattaatagcaagaaacaaacttcttagcaacaaaatcgaagcactaaccaagaagttggaagcgtaaaacgtggcaaagttgtcaaaaaat |
225 |
Q |
| |
|
|||||||| ||| || ||| |||||||||||||| |||| ||| ||||| || | |||| ||||||||| || | || | ||||||||||| ||| |
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|
| T |
19292355 |
acatgatgccttactaaaaagcaacaaacttcttagtgacaagatcaaagcattagctaagaggttggaagcagaagaagtagaaaagttgtcaatcaat |
19292454 |
T |
|
| Q |
226 |
g--gtaagttatgacttttttgagcaatctcataaaagtagtgcatgtcttccagcaagtttggggttatc |
294 |
Q |
| |
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| ||||| | ||||||| ||||||| ||| | ||||| ||||||| |||||||||||||| |||||||| |
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|
| T |
19292455 |
ggtgtaagatgggacttttatgagcaagctcgtgaaagtggtgcatgacttccagcaagtttagggttatc |
19292525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 26 - 294
Target Start/End: Original strand, 28313079 - 28313343
Alignment:
| Q |
26 |
aaatccaagagctcattgataacatgtccttgaacgagtatttccctcaaagcgagtataggggtgttgttaagaagcatggagttccaaacttggaaac |
125 |
Q |
| |
|
|||||| ||||||||| || ||||||||||||||||| ||| |||||||||||| |||||| ||| || |||||||| ||||||| || ||||||||| |
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|
| T |
28313079 |
aaatccgagagctcatcgacaacatgtccttgaacgaatatcgtcctcaaagcgagaatagggatgtggtaaagaagcagggagttctaagcttggaaac |
28313178 |
T |
|
| Q |
126 |
gcatgatgcattaatagcaagaaacaaacttcttagcaacaaaatcgaagcactaaccaagaagttggaagcgtaaaacgtggcaaagttgtcaaaaaat |
225 |
Q |
| |
|
||||||||||| ||| ||| |||||||| || | |||| ||| || ||| | |||| | |||||| | || | || ||||||||||| | ||| |
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|
| T |
28313179 |
--atgatgcattactagaaagcaacaaactcctcaattacaagatcaaa---ctagctaaga-gatggaagtgcaagaagtagcaaagttgtctatcaat |
28313272 |
T |
|
| Q |
226 |
ggt--aagttatgacttttttgagcaatctcataaaagtagtgcatgtcttccagcaagtttggggttatc |
294 |
Q |
| |
|
|| ||| |||||||||| |||||| ||||| ||||| |||||||||||||| |||||||| ||||||| |
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|
| T |
28313273 |
agtgtaagctatgacttttgtgagcacgctcatgaaagtggtgcatgtcttccaacaagtttgaggttatc |
28313343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 295
Target Start/End: Original strand, 13395083 - 13395115
Alignment:
| Q |
263 |
agtgcatgtcttccagcaagtttggggttatcc |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
13395083 |
agtgcatgtcttccagcaagtttggggttatcc |
13395115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 112
Target Start/End: Original strand, 13394871 - 13394934
Alignment:
| Q |
49 |
atgtccttgaacgagtatttccctcaaagcgagtataggggtgttgttaagaagcatggagttc |
112 |
Q |
| |
|
|||||||||||||||| | ||||||||||||| ||||||||| || ||||| |||||||||| |
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|
| T |
13394871 |
atgtccttgaacgagtgtcaccctcaaagcgagactaggggtgtggtgaagaatcatggagttc |
13394934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 375 - 508
Target Start/End: Complemental strand, 12960856 - 12960723
Alignment:
| Q |
375 |
agaacatctgaacttctcatggagaggaaacaattctcttaacccaccccaaacatcaaaccagcagccgcctaaaaagagattggaagaagtcctaacc |
474 |
Q |
| |
|
|||||||| || |||||||||||| |||| ||||| ||||| ||| | ||||||||||| || | || | ||||||||| |||||||| | |||||| |
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|
| T |
12960856 |
agaacatccaaatttctcatggagaagaaataattcccttaatccatctcaaacatcaaatcaaaaaccacttaaaaagagcttggaagagatgctaacc |
12960757 |
T |
|
| Q |
475 |
caatacatgcaaacaacacaaagtcaaattgaag |
508 |
Q |
| |
|
|||||||| |||| || | ||||||||||||||| |
|
|
| T |
12960756 |
caatacattcaaaaaatataaagtcaaattgaag |
12960723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 167
Target Start/End: Original strand, 7405203 - 7405330
Alignment:
| Q |
40 |
attgataacatgtccttgaacgagtatttccctcaaagcgagtataggggtgttgttaagaagcatggagttccaaacttggaaacgcatgatgcattaa |
139 |
Q |
| |
|
|||||||||||||||||||| |||||| | | ||| | || |||||| |||| |||| ||||| ||||||| || | |||||||||||||| ||| |
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|
| T |
7405203 |
attgataacatgtccttgaatgagtatcgctcccaaggtgataatagggatgttattaataagcaaggagttctaagcccagaaacgcatgatgccttat |
7405302 |
T |
|
| Q |
140 |
tagcaagaaacaaacttcttagcaacaa |
167 |
Q |
| |
|
||||||| ||||| |||||||||||||| |
|
|
| T |
7405303 |
tagcaagcaacaagcttcttagcaacaa |
7405330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 40791373 - 40791413
Alignment:
| Q |
26 |
aaatccaagagctcattgataacatgtccttgaacgagtat |
66 |
Q |
| |
|
||||||||||||| |||||| |||||||||| ||||||||| |
|
|
| T |
40791373 |
aaatccaagagcttattgattacatgtccttaaacgagtat |
40791413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 227 - 348
Target Start/End: Complemental strand, 30348388 - 30348267
Alignment:
| Q |
227 |
gtaagttatgacttttttgagcaatctcataaaagtagtgcatgtcttccagcaagtttggggttatccaagaagcaagtaaaatacatgggtgtgtaca |
326 |
Q |
| |
|
||||| || ||||||| | ||| | ||||| ||||| ||||||| |||| | ||| |||||||||| | || ||||||| ||||||||||||| || | |
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|
| T |
30348388 |
gtaagctacgacttttgtaagctagctcatgaaagtggtgcatgccttctaaaaagattggggttattcgaggagcaagtgaaatacatgggtgcttata |
30348289 |
T |
|
| Q |
327 |
cgaggcaacaaagaaatcctta |
348 |
Q |
| |
|
| || ||||||||||||||||| |
|
|
| T |
30348288 |
ccagacaacaaagaaatcctta |
30348267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 146
Target Start/End: Complemental strand, 13040707 - 13040596
Alignment:
| Q |
35 |
agctcattgataacatgtccttgaacgagtatttccctcaaagcgagtataggggtgttgttaagaagcatggagttccaaacttggaaacgcatgatgc |
134 |
Q |
| |
|
|||||||||| |||||| |||| ||| | ||| ||||||| |||| |||||| || || |||||||| ||||||| || |||||||| |||||||| |
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|
| T |
13040707 |
agctcattgacaacatggcctttaacaaatatcgtcctcaaaacgaggatagggacgtggtgaagaagcaaggagttctaagcttggaaattcatgatgc |
13040608 |
T |
|
| Q |
135 |
attaatagcaag |
146 |
Q |
| |
|
||||||||||| |
|
|
| T |
13040607 |
cttaatagcaag |
13040596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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