View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16172_high_6 (Length: 544)
Name: NF16172_high_6
Description: NF16172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16172_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 13 - 528
Target Start/End: Complemental strand, 3604057 - 3603540
Alignment:
| Q |
13 |
gaagtagatggaagatatttgtgaagttgtatatgcatatcatttgtaacttctgaatataggcttaaaaacaccctctatcaagattcaagaacttgca |
112 |
Q |
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| T |
3604057 |
gaagtagatggaagatatttgtgaagttgtatatgcatatcatttgtaacttctgaatataggcttaaaaacactctctatcaagattcaagaacttgca |
3603958 |
T |
|
| Q |
113 |
taactgtacgtgcaaggaatcattcaaaggcaatgcccgctgtagaataatggagaagacagtgtcaaaagaagggaaacgacaaatcatatgcatagct |
212 |
Q |
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| T |
3603957 |
taactgtacgtgcaaggaatcattcaaaggcaatgcccgctgtagaataatggagaagacagtgtcaaaagaagggaaacgacaaatcatatgcatagct |
3603858 |
T |
|
| Q |
213 |
ggttgagtttaaaaaacaataagtaatgcatatacctattttgatagaatatctaagtaacctaatcgtatctaatacaatctgcaacacattatattat |
312 |
Q |
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| T |
3603857 |
ggttgagtttaaaaaacaataagtaatgcatatacctattttgatagaatatctaagtaacctaatcgtatctaatacaatctgcaacacattatattat |
3603758 |
T |
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| Q |
313 |
tcatatttaga--gattacctacacaatctaatttaaaaattctactgttgaacaattagtgtaatttcttgggacagatctcagaggcatccttgatga |
410 |
Q |
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||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3603757 |
tcatatttagactgattacctacacaatctaatttaaaaatgctactgttgaacaattagtgtaatttcttgggacagatctcagaggcatccttgatga |
3603658 |
T |
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| Q |
411 |
ttgggcttctaaaaatattagggtctcaaatannnnnnnagatttatgaatgactctattaagcgtacataaaatatcaaattgcttgcgatgtccgatt |
510 |
Q |
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| T |
3603657 |
ttgggcttctaaaaatattagggtctcaaatatttttttagatttatgaatgactctattaagcgtacataaaatatcaaattgcttgcgatgtccgagt |
3603558 |
T |
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| Q |
511 |
gaagtgagcaatgaatat |
528 |
Q |
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| T |
3603557 |
gaagtgagcaatgaatat |
3603540 |
T |
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