View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16172_low_1 (Length: 852)
Name: NF16172_low_1
Description: NF16172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16172_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-104; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 233 - 433
Target Start/End: Complemental strand, 42079012 - 42078812
Alignment:
| Q |
233 |
caggattaaaggattttccaaaccttcagttggagctgcttcgagacaaaacattttccaaacaatgtgaacatgttattcttttcaaaaattatagttc |
332 |
Q |
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| T |
42079012 |
caggattaaaggattttccaaaccttcagttggagctgcttggagacaaaacattttccaaaccatgtgaacatgttattcttttcaaaaattatagttc |
42078913 |
T |
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| Q |
333 |
agatgtataaaggttaaatggttaatgaagtttgtagatattagtgtctcacacgacttctatttcctataccagataatatctacatcaaagcttcgga |
432 |
Q |
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| T |
42078912 |
agatgtataaaggttaaatggttaatgaagtttgtagatattagtgtctcacacgacttctatttcctataccagataatatctacatcaaagcttcgga |
42078813 |
T |
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| Q |
433 |
a |
433 |
Q |
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| T |
42078812 |
a |
42078812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 42079261 - 42079042
Alignment:
| Q |
16 |
ctatgtgcgctacaaatgtcaatgtccatggcttactatgaccaaccttgcccgatcaaataaattcactgtctaatgtatcacattatcatgtaaagtt |
115 |
Q |
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| T |
42079261 |
ctatgtgcgctacaaatgtcaatgcccatcgcttactatgaccaaccttgcccgatcaaataaattcactgtctaatgtatcacattatcatgtaaagtt |
42079162 |
T |
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| Q |
116 |
gcaataaattggtgcatatgcaaaggtacaactctaattcctggagtcaagtcaacagcacaaacagaggaaaatgtgggtgctcttggttggcgtcttt |
215 |
Q |
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| T |
42079161 |
gcaataaattggtgcatatgcaaaggtacaactctaattcctggagtcaagtcaatagcaaaggcagaggaaaatttgggtgctcttggttggcgtcttt |
42079062 |
T |
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| Q |
216 |
catcagaccagctgcttcag |
235 |
Q |
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| T |
42079061 |
catcagaccagctgcttcag |
42079042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 26 - 235
Target Start/End: Complemental strand, 42081678 - 42081471
Alignment:
| Q |
26 |
tacaaatgtcaatgtccatggcttactatgaccaaccttgcccgatcaaataaattcactgtctaatgtatcacattatcatgtaaagttgcaataaatt |
125 |
Q |
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|||||||| ||| ||| || |||||| |||||||||||||||||||||||||||||| ||||||||| |||| || |||||| | ||||||||||||| |
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| T |
42081678 |
tacaaatgacaacgtcgatcacttactctgaccaaccttgcccgatcaaataaattcattgtctaatgcatca--ttgtcatgtcaggttgcaataaatt |
42081581 |
T |
|
| Q |
126 |
ggtgcatatgcaaaggtacaactctaattcctggagtcaagtcaacagcacaaacagaggaaaatgtgggtgctcttggttggcgtctttcatcagacca |
225 |
Q |
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| T |
42081580 |
ggtgcatatgcaaaggtacaattccaattcctggagtcaagtcaataacacaagcagaggaaaatttgggtgctctgggttggcgtctctcctcaaacga |
42081481 |
T |
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| Q |
226 |
gctgcttcag |
235 |
Q |
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||| |||||| |
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| T |
42081480 |
gctacttcag |
42081471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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