View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16172_low_10 (Length: 442)
Name: NF16172_low_10
Description: NF16172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16172_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 98; Significance: 4e-48; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 24 - 262
Target Start/End: Complemental strand, 33353119 - 33352881
Alignment:
| Q |
24 |
ggtgagaaaaaacataaagttgaagttactttataatttactttctcttgttatttatttccaaggcct-attaagaaaaatgattttaagagtaaacaa |
122 |
Q |
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| T |
33353119 |
ggtgagaaaaaacataaagttga---tactaaataatttattttctgttgttatttacttctatgacttcatttagaaaaatgattttaagagtaaacaa |
33353023 |
T |
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| Q |
123 |
aaaccattcataaaatgcaattaaacaacattcctcaatatcattatcatt-tagga--aaaacaaagttgttattttcaacacccatcaataccattat |
219 |
Q |
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| T |
33353022 |
aaactattcatacaatgcaattaaccaaccttcctcaatatcattatcattcgatgaagaaaaaaaagtttttattttcaatgctcatcaatatcattat |
33352923 |
T |
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| Q |
220 |
catttcaagcaaaacaaagaagtcatcacaattaagttcaagg |
262 |
Q |
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| T |
33352922 |
catttcaagc-aaacatagaagtcatcacaactaagttcaagg |
33352881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 15 - 139
Target Start/End: Complemental strand, 33352636 - 33352512
Alignment:
| Q |
15 |
cagagaggtggtgagaaaaaacataaagttgaagttactttataatttactttctcttgttatttatttccaaggcctattaagaaaaatgattttaaga |
114 |
Q |
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| T |
33352636 |
cagagaggtggtgagaaaaaacataaagttgaagttactttataatttactttatgttgttatttatttccaagacctatttagaaaaatgattttaaga |
33352537 |
T |
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| Q |
115 |
gtaaacaaaaaccattcataaaatg |
139 |
Q |
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| T |
33352536 |
gtaaactaaaaccatttatacaatg |
33352512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 398 - 426
Target Start/End: Complemental strand, 33352514 - 33352486
Alignment:
| Q |
398 |
atgacaaacataacaatatataacatatt |
426 |
Q |
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| T |
33352514 |
atgacaaacataacaatatataacatatt |
33352486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 240
Target Start/End: Original strand, 3961217 - 3961253
Alignment:
| Q |
204 |
ccatcaataccattatcatttcaagcaaaacaaagaa |
240 |
Q |
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| T |
3961217 |
ccatcaatatcattatcatttcaagtaaaacaaagaa |
3961253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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