View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16172_low_11 (Length: 438)
Name: NF16172_low_11
Description: NF16172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16172_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 82 - 422
Target Start/End: Complemental strand, 35388948 - 35388607
Alignment:
| Q |
82 |
tacacacatacttatgatatatagagcaaaataaacgaa-gcaaaacaacctcatcataattaagaagcaacattccatcactccctttgatattccttc |
180 |
Q |
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| T |
35388948 |
tacacacatacttatgatatatagagcaaaataaacgaaagcaaaacaacctcatcataattaagaagcaacattccatcactccctttgatattccttc |
35388849 |
T |
|
| Q |
181 |
aatggccacatcaaagctgatttcagttatgttaatgttaacctttgcaacaaccattattttgataaatgtggtgattgtaggaggaaagaaaacatgg |
280 |
Q |
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| T |
35388848 |
aatggccacatcaaagctgatttcagttatgttaatgttaacctttgcaacaaccattattttgataaatgtggtgattgtaggaggaaagaaaacatgg |
35388749 |
T |
|
| Q |
281 |
tgtgtttctaggagtgaagcaggtacccaacaactgattgatgctttaaattatgcatgtggagctggtgctgattgcggtcctattcaacctggtggaa |
380 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35388748 |
tgtgtttctaggagtgaagcaggtacccaacaactgcttgatgctttaaattatgcatgtggagctggtgctgattgcggtcctattcaacctggtggaa |
35388649 |
T |
|
| Q |
381 |
gttgttattatccaaacacacttcaaaatcatgcttcctatg |
422 |
Q |
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| T |
35388648 |
gttgttattatccaaacacacttcaaaatcatgcttcctatg |
35388607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 35389154 - 35389088
Alignment:
| Q |
17 |
atgaatcataattattttttccgaaagcgacatatttgagacggagggagtattgcatatttattta |
83 |
Q |
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| T |
35389154 |
atgaatcataattattttttccgaaagcgacatatttgagacggaggaagtattgcatatttattta |
35389088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 321 - 422
Target Start/End: Complemental strand, 35392438 - 35392337
Alignment:
| Q |
321 |
atgctttaaattatgcatgtggagctggtgctgattgcggtcctattcaacctggtggaagttgttattatccaaacacacttcaaaatcatgcttccta |
420 |
Q |
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|||||||||||||||||||| | ||| |||||||| || |||||||| ||||||||||| || | | |||||||||||||||||| ||||||||| || |
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| T |
35392438 |
atgctttaaattatgcatgttcaaatggagctgattgtggacctattcagcctggtggaagctgctttaatccaaacacacttcaaagtcatgcttcata |
35392339 |
T |
|
| Q |
421 |
tg |
422 |
Q |
| |
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|| |
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|
| T |
35392338 |
tg |
35392337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 321 - 422
Target Start/End: Complemental strand, 35403208 - 35403107
Alignment:
| Q |
321 |
atgctttaaattatgcatgtggagctggtgctgattgcggtcctattcaacctggtggaagttgttattatccaaacacacttcaaaatcatgcttccta |
420 |
Q |
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|||||||||||||||||||| | ||| |||||||| || |||||||| ||||||||||| || | | |||||||||||||||||| ||||||||| || |
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| T |
35403208 |
atgctttaaattatgcatgttcaaatggagctgattgtggacctattcagcctggtggaagctgctttaatccaaacacacttcaaagtcatgcttcata |
35403109 |
T |
|
| Q |
421 |
tg |
422 |
Q |
| |
|
|| |
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|
| T |
35403108 |
tg |
35403107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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