View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16172_low_12 (Length: 418)
Name: NF16172_low_12
Description: NF16172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16172_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 23 - 402
Target Start/End: Complemental strand, 29238848 - 29238469
Alignment:
| Q |
23 |
aagttcgtcttcccggtcgtcgacgacggcctctaccaacctaaaagtaacaaaacccgcgcggcctacaacaatctgctcactcttatccagcagccac |
122 |
Q |
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| T |
29238848 |
aagttcgtcttcccggtcgtcgacgacggcctctaccaacctaaaactaacaaaacccgcgcggcctacaacaatctgctcactcttatccagcagccac |
29238749 |
T |
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| Q |
123 |
gccctggtcagcctcttgccggtcagccgctcagtactgtcagattcgtggctgataagatacttgaaattctcaaaaatgatgttgttaattactatga |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
29238748 |
gccctggtcagcctcttgccggtcagccgctcagtactgtcagattcgtggctgataagatacttgaaattctcaaaaatgatgctgttaattactatga |
29238649 |
T |
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| Q |
223 |
caagaagattaacattgagatgcttcttaaccctatccctaaccatgtcttcgaacagattgtcgaaattggtaaacttataaccgatttctatgggttt |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29238648 |
caagaagattaacattgagatgcttcttaaccctatccctaaccatgtcttcgaacagattgtcgaaattggtaaacttataaccgatttctatgggttt |
29238549 |
T |
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| Q |
323 |
gctgctggtgctcatgtcgatggtggcgttgtcgatggtttacagaagatgtctatttgcagcaataatgatagtgttgt |
402 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29238548 |
gctgctggtgctcatgtcgatggtggcgttgtcgatagtttacagaagatgtctatttgcagcaataatgatagtgttgt |
29238469 |
T |
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