View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16172_low_19 (Length: 347)

Name: NF16172_low_19
Description: NF16172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16172_low_19
NF16172_low_19
[»] chr8 (2 HSPs)
chr8 (23-109)||(1488253-1488339)
chr8 (139-208)||(1488152-1488223)
[»] chr3 (3 HSPs)
chr3 (23-109)||(50306291-50306377)
chr3 (254-329)||(54901068-54901143)
chr3 (139-208)||(50306190-50306261)
[»] chr1 (2 HSPs)
chr1 (23-109)||(3788629-3788715)
chr1 (139-208)||(3788745-3788816)
[»] chr5 (1 HSPs)
chr5 (254-329)||(6007288-6007363)
[»] chr2 (2 HSPs)
chr2 (23-109)||(26021679-26021765)
chr2 (139-208)||(26021578-26021649)
[»] chr4 (2 HSPs)
chr4 (254-329)||(33463997-33464072)
chr4 (149-205)||(28123965-28124021)


Alignment Details
Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 1488339 - 1488253
Alignment:
Q  23 gccacatcagagaccatgaaccatcaacactagcatctcatccgccatgaaactacaatccaatctcatcttcaccatgttgttttt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||    
T  1488339 gccacatcagagaccatgaaccatcaacactagcatctcatccaccatgaaactacaatccattttcatcttcaccatgttgttttt 1488253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 1488223 - 1488152
Alignment:
Q  139 gattcaaaccaattcttcacgtgttgcaattaagaaacatg--tttttcatggaaacaattattaaaaacaa 208  Q
    |||||||||||||  ||||||||||||||||||||| ||||  ||||| |||||| ||||||||||||||||    
T  1488223 gattcaaaccaataattcacgtgttgcaattaagaagcatgttttttttatggaaccaattattaaaaacaa 1488152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 50306377 - 50306291
Alignment:
Q  23 gccacatcagagaccatgaaccatcaacactagcatctcatccgccatgaaactacaatccaatctcatcttcaccatgttgttttt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||    
T  50306377 gccacatcagagaccatgaaccatcaacactagcatctcatccaccatgaaactacaatccattttcatcttcaccatgttgttttt 50306291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 254 - 329
Target Start/End: Original strand, 54901068 - 54901143
Alignment:
Q  254 atctaaaactactgcattcatgttgaacaaattcttaaattattaaattcttgatggcttttagcatgaatttctt 329  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54901068 atctaaaactactgcattaatgttgaacaaattcttaaattattaaattcttgatggcttttagcatgaatttctt 54901143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 50306261 - 50306190
Alignment:
Q  139 gattcaaaccaattcttcacgtgttgcaattaagaaacatg--tttttcatggaaacaattattaaaaacaa 208  Q
    |||||||||||||||||||||||||||||||| ||| ||||  ||||| |||||| ||||||||||||||||    
T  50306261 gattcaaaccaattcttcacgtgttgcaattaggaagcatgttttttttatggaaccaattattaaaaacaa 50306190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 3788629 - 3788715
Alignment:
Q  23 gccacatcagagaccatgaaccatcaacactagcatctcatccgccatgaaactacaatccaatctcatcttcaccatgttgttttt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||    
T  3788629 gccacatcagagaccatgaaccatcaacactagcatctcatccaccatgaaactacaatccattttcatcttcaccatgttgttttt 3788715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 139 - 208
Target Start/End: Original strand, 3788745 - 3788816
Alignment:
Q  139 gattcaaaccaattcttcacgtgttgcaattaagaaacatg--tttttcatggaaacaattattaaaaacaa 208  Q
    |||||||||||||||||||||||||||||||| ||| ||||  ||||| |||||| ||||||||||||||||    
T  3788745 gattcaaaccaattcttcacgtgttgcaattaggaagcatgttttttttatggaaccaattattaaaaacaa 3788816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 254 - 329
Target Start/End: Original strand, 6007288 - 6007363
Alignment:
Q  254 atctaaaactactgcattcatgttgaacaaattcttaaattattaaattcttgatggcttttagcatgaatttctt 329  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6007288 atctaaaactactgcattaatgttgaacaaattcttaaattattaaattcttgatggcttttagcatgaatttctt 6007363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 26021765 - 26021679
Alignment:
Q  23 gccacatcagagaccatgaaccatcaacactagcatctcatccgccatgaaactacaatccaatctcatcttcaccatgttgttttt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| | ||||||||||||||||||||||    
T  26021765 gccacatcagagaccatgaaccatcaacactagcatctcatccatcatgaaactacaatccattttcatcttcaccatgttgttttt 26021679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 26021649 - 26021578
Alignment:
Q  139 gattcaaaccaattcttcacgtgttgcaattaagaaacatg--tttttcatggaaacaattattaaaaacaa 208  Q
    |||||||||||||||||||||||||||||||| ||| ||||  ||||| |||||| ||||||||||||||||    
T  26021649 gattcaaaccaattcttcacgtgttgcaattaggaagcatgttttttttatggaaccaattattaaaaacaa 26021578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 254 - 329
Target Start/End: Complemental strand, 33464072 - 33463997
Alignment:
Q  254 atctaaaactactgcattcatgttgaacaaattcttaaattattaaattcttgatggcttttagcatgaatttctt 329  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  33464072 atctaaaactactgcattaatgttgaacaaattcttaaattattaaatttttgatggcttttagcatgattttctt 33463997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 28124021 - 28123965
Alignment:
Q  149 aattcttcacgtgttgcaattaagaaacatgtttttcatggaaacaattattaaaaa 205  Q
    ||||||||||||||||||||||||||||| | |||| |||||  |||||| ||||||    
T  28124021 aattcttcacgtgttgcaattaagaaacaagctttttatggacccaattaataaaaa 28123965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University