View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16172_low_20 (Length: 346)
Name: NF16172_low_20
Description: NF16172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16172_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 11 - 332
Target Start/End: Original strand, 43424048 - 43424365
Alignment:
| Q |
11 |
catcatcaacctaatttcttctcaactactactcctaattctaattttcaaactccgtatcctcatgcatcttctcttcctcttccttcttggcatgaaa |
110 |
Q |
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| T |
43424048 |
catcatcaacctaatttcttctcaactactactcctaattctaattttcaaactccatatcctcatgcatcttctcttcctcttccttcttggcatgaaa |
43424147 |
T |
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| Q |
111 |
atcaagatcaacttcctgagtcatggagtcacctcctcatgtaattaattaacaccctctctctttctcaatcactcacacactagaaattaaaagctga |
210 |
Q |
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| T |
43424148 |
atcaagatcaacttcctgagtcatggagtcacctcctcatgtaattaattaacaccctctctctttctcaatcactcacacactagaaattaaaagctga |
43424247 |
T |
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| Q |
211 |
attgagnnnnnnnnnnnnngagtggtaaagctgagttgaactaccgacggaaattagtgatggaaaaataaattcgatcttcagtttttgtttctctaac |
310 |
Q |
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||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43424248 |
gttgag----tttttttttgaatggtaaagctgagttgaactaccgacggaaattagtgatggaaaaataaattcgatcttcagtttttgtttctctaac |
43424343 |
T |
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| Q |
311 |
acttaacgatcgaattaaaagt |
332 |
Q |
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|||||||||||||||||||||| |
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| T |
43424344 |
acttaacgatcgaattaaaagt |
43424365 |
T |
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