View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16172_low_22 (Length: 335)
Name: NF16172_low_22
Description: NF16172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16172_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 13 - 317
Target Start/End: Complemental strand, 37811038 - 37810734
Alignment:
| Q |
13 |
aatatatttgatgtgctaattaatcnnnnnnnngttaagcttacggcatctttgaagcagcccaaaaaagttcaattagaacagtgcgaggcaatagggt |
112 |
Q |
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| T |
37811038 |
aatatatttgatgtgctaattaatcttttttttgttaagattacggcatctttgaagcagcccaaaaaagttcaattagaacagtgcgaggcaatagggt |
37810939 |
T |
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| Q |
113 |
caaggattgtgtggactctacgagaagttggagatagtatgaaacaaatgagaaaatgtgaaggaagggacaacactatagataagttgaaaacaacgag |
212 |
Q |
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| T |
37810938 |
caaggattgtgtggactctacgagaagttggagatagcatgaaacaaatgagaaaatgtgaaggaagggacaacactatagataagttgaaaacaacgag |
37810839 |
T |
|
| Q |
213 |
agaagagttgagtttggtcatttcaacgtccatgattgaagaatttgagaatggtgaaatgctaccaattgcaagcttggtattcttgctaatggaagtg |
312 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37810838 |
agaagagttgagtttggtcatttccacgtccatgattgaagaatttgagaatggtgaaatgctaccaattgcaagcttggtattcttgctaatggaagtg |
37810739 |
T |
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| Q |
313 |
gtgga |
317 |
Q |
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||||| |
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| T |
37810738 |
gtgga |
37810734 |
T |
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