View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16172_low_23 (Length: 329)
Name: NF16172_low_23
Description: NF16172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16172_low_23 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 9 - 313
Target Start/End: Original strand, 43623581 - 43623877
Alignment:
| Q |
9 |
gagaagaaagggcctgtgtttcttgctatgtcaacaccactagctcttattattacaatcctctcctctatatttctcttcggtgatataataagtttgg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43623581 |
gagaagaaagggcctgtgtttcttgctatgtcaacaccactagctcttattattacaatcctctcctctatatttctcttcggtgatataataagtttgg |
43623680 |
T |
|
| Q |
109 |
gaaggtaattccatccacttcttagtaaatttctaaacgtttatctagttttgtctttatttatggttgttaattcacaaattagaannnnnnnnnnnnn |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43623681 |
gaaggtaattccatccacttcttagtaaatttctaaacatttatctagttttgtctttatttatggttgttaattcacaaattagaa--------tttat |
43623772 |
T |
|
| Q |
209 |
nnnnnnnnncgcattagttaattcaaatggagatgatgcttactcgattgagataggtctaataattgtacaaaattaccaataaaaaagagtacatgaa |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43623773 |
ttattttttcgcattagttaattcaaatggagatgatgcttacacgattgagataggtctaataattgtacaaaattaccaataaaaaagagtacatgaa |
43623872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 134 - 194
Target Start/End: Complemental strand, 42709063 - 42709003
Alignment:
| Q |
134 |
taaatttctaaacgtttatctagttttgtctttatttatggttgttaattcacaaattaga |
194 |
Q |
| |
|
|||||||| |||| | ||||||||||||||||||||| || |||||||||| ||||||||| |
|
|
| T |
42709063 |
taaatttcgaaacatctatctagttttgtctttatttgtgtttgttaattctcaaattaga |
42709003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University