View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16172_low_24 (Length: 304)
Name: NF16172_low_24
Description: NF16172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16172_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 142; Significance: 2e-74; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 9347632 - 9347789
Alignment:
| Q |
16 |
atggagagaattttaggaacactaagccttccaaagctcattggaaacaatctgaagatgctaagcttaaacaacttatcgctgatcatggtgctaaaat |
115 |
Q |
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| T |
9347632 |
atggagggaattttaggaacactaagccttccaaagctcattggaaaccatctgaagatgctaagcttaaacaacttatcgctgatcatggtgctaaaaa |
9347731 |
T |
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| Q |
116 |
ttggaacaacattgctgaacaactacaaggaagaacatgtatgatcctacacaacata |
173 |
Q |
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| T |
9347732 |
ttggaacaacattgctgaacaactacaaggaagaacaggtatgatcctacacaacata |
9347789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 16 - 176
Target Start/End: Original strand, 9355677 - 9355837
Alignment:
| Q |
16 |
atggagagaattttaggaacactaagccttccaaagctcattggaaacaatctgaagatgctaagcttaaacaacttatcgctgatcatggtgctaaaat |
115 |
Q |
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| T |
9355677 |
atggagggagttttaggaactctaagctttccaaagctcattggaaaccatttgaagatgataagcttaaacaacttatcgctgaccatggtgctaaaga |
9355776 |
T |
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| Q |
116 |
ttggaacaacattgctgaacaactacaaggaagaacatgtatgatcctacacaacataaca |
176 |
Q |
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| T |
9355777 |
ttggaacaacattgctgaaaaactacaaggaagatcaggtttgatcctacactacctaaca |
9355837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 164
Target Start/End: Original strand, 9360026 - 9360137
Alignment:
| Q |
53 |
tcattggaaacaatctgaagatgctaagcttaaacaacttatcgctgatcatggtgctaaaatttggaacaacattgctgaacaactacaaggaagaaca |
152 |
Q |
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| T |
9360026 |
tcattggagaccatctgaagatgctaagcttaaaaaacttgttgatgaatttggtcctcacaattggaacaacattgctgaacaaatacatggaagatca |
9360125 |
T |
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| Q |
153 |
tgtatgatccta |
164 |
Q |
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| T |
9360126 |
ggtataatccta |
9360137 |
T |
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