View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16172_low_25 (Length: 302)

Name: NF16172_low_25
Description: NF16172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16172_low_25
NF16172_low_25
[»] chr8 (8 HSPs)
chr8 (183-226)||(23361636-23361679)
chr8 (183-222)||(6536566-6536605)
chr8 (184-226)||(35690051-35690093)
chr8 (190-226)||(42740547-42740583)
chr8 (183-222)||(33017260-33017299)
chr8 (184-226)||(3174792-3174834)
chr8 (183-215)||(28783106-28783138)
chr8 (183-215)||(36205241-36205273)
[»] chr6 (4 HSPs)
chr6 (183-221)||(15951294-15951332)
chr6 (183-226)||(28841460-28841503)
chr6 (184-226)||(9626079-9626121)
chr6 (225-273)||(1178785-1178834)
[»] chr7 (10 HSPs)
chr7 (186-226)||(7721418-7721458)
chr7 (183-222)||(2882996-2883035)
chr7 (227-274)||(4574509-4574557)
chr7 (183-226)||(15137599-15137642)
chr7 (183-222)||(21558174-21558213)
chr7 (183-222)||(26459401-26459440)
chr7 (183-222)||(29785292-29785331)
chr7 (183-226)||(42712004-42712047)
chr7 (185-226)||(21570019-21570060)
chr7 (190-226)||(33222423-33222459)
[»] chr5 (6 HSPs)
chr5 (183-226)||(25627103-25627146)
chr5 (183-215)||(16457856-16457888)
chr5 (183-222)||(14285207-14285246)
chr5 (183-226)||(37258353-37258396)
chr5 (183-226)||(43442242-43442285)
chr5 (183-215)||(30883196-30883228)
[»] chr4 (3 HSPs)
chr4 (183-226)||(7949441-7949484)
chr4 (183-222)||(37109342-37109381)
chr4 (192-222)||(44194975-44195005)
[»] chr3 (5 HSPs)
chr3 (183-222)||(53412991-53413030)
chr3 (186-222)||(34062539-34062575)
chr3 (183-226)||(14186693-14186736)
chr3 (183-227)||(16354878-16354922)
chr3 (186-226)||(34622528-34622568)
[»] chr1 (9 HSPs)
chr1 (183-226)||(17745243-17745286)
chr1 (183-222)||(2799908-2799947)
chr1 (183-222)||(8904460-8904499)
chr1 (183-222)||(9165186-9165225)
chr1 (183-226)||(15786307-15786350)
chr1 (183-222)||(33700764-33700803)
chr1 (183-221)||(3265970-3266008)
chr1 (184-226)||(6650642-6650684)
chr1 (183-215)||(43446009-43446041)
[»] scaffold0180 (1 HSPs)
scaffold0180 (184-223)||(19952-19991)
[»] scaffold0002 (1 HSPs)
scaffold0002 (183-222)||(94962-95001)
[»] chr2 (3 HSPs)
chr2 (183-226)||(11251133-11251176)
chr2 (183-222)||(33839251-33839290)
chr2 (183-222)||(45026789-45026828)
[»] scaffold0238 (1 HSPs)
scaffold0238 (184-222)||(2702-2740)
[»] scaffold0118 (1 HSPs)
scaffold0118 (184-226)||(41620-41662)
[»] scaffold0299 (1 HSPs)
scaffold0299 (183-223)||(11574-11614)


Alignment Details
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 226
Target Start/End: Complemental strand, 23361679 - 23361636
Alignment:
Q  183 gtgctcctcctcaaggtctcatgttcaattctctctggtgtcaa 226  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  23361679 gtgctcctcctcaaggtctcaggttcaattctctctggtgtcaa 23361636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 222
Target Start/End: Original strand, 6536566 - 6536605
Alignment:
Q  183 gtgctcctcctcaaggtctcatgttcaattctctctggtg 222  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  6536566 gtgctcctcctcaaggtctcaggttcaattctctctggtg 6536605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 35690093 - 35690051
Alignment:
Q  184 tgctcctcctcaaggtctcatgttcaattctctctggtgtcaa 226  Q
    |||||||||||||||||||| |||| |||||||||||||||||    
T  35690093 tgctcctcctcaaggtctcaggttcgattctctctggtgtcaa 35690051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 42740547 - 42740583
Alignment:
Q  190 tcctcaaggtctcatgttcaattctctctggtgtcaa 226  Q
    |||||||||||||| ||||||||||||||||||||||    
T  42740547 tcctcaaggtctcaggttcaattctctctggtgtcaa 42740583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 222
Target Start/End: Original strand, 33017260 - 33017299
Alignment:
Q  183 gtgctcctcctcaaggtctcatgttcaattctctctggtg 222  Q
    ||||||||||||||||||||| |||| |||||||||||||    
T  33017260 gtgctcctcctcaaggtctcaggttcgattctctctggtg 33017299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 3174834 - 3174792
Alignment:
Q  184 tgctcctcctcaaggtctcatgttcaattctctctggtgtcaa 226  Q
    ||||| |||||||||||||| |||| |||||||||||||||||    
T  3174834 tgctcatcctcaaggtctcaggttcgattctctctggtgtcaa 3174792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 28783106 - 28783138
Alignment:
Q  183 gtgctcctcctcaaggtctcatgttcaattctc 215  Q
    |||||||||||||||||||||||||| ||||||    
T  28783106 gtgctcctcctcaaggtctcatgttcgattctc 28783138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 36205241 - 36205273
Alignment:
Q  183 gtgctcctcctcaaggtctcatgttcaattctc 215  Q
    |||||||||||||||||||||||||| ||||||    
T  36205241 gtgctcctcctcaaggtctcatgttcgattctc 36205273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 15951332 - 15951294
Alignment:
Q  183 gtgctcctcctcaaggtctcatgttcaattctctctggt 221  Q
    |||||||||||||||||||||||||||||||||||||||    
T  15951332 gtgctcctcctcaaggtctcatgttcaattctctctggt 15951294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 226
Target Start/End: Original strand, 28841460 - 28841503
Alignment:
Q  183 gtgctcctcctcaaggtctcatgttcaattctctctggtgtcaa 226  Q
    ||||||||||||||||||||| |||| |||||||| ||||||||    
T  28841460 gtgctcctcctcaaggtctcaagttcgattctctccggtgtcaa 28841503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 9626079 - 9626121
Alignment:
Q  184 tgctcctcctcaaggtctcatgttcaattctctctggtgtcaa 226  Q
    ||||||||||| ||||||||||||| |||||||| ||||||||    
T  9626079 tgctcctcctcgaggtctcatgttcgattctctccggtgtcaa 9626121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 273
Target Start/End: Original strand, 1178785 - 1178834
Alignment:
Q  225 aaaattttgcgattttactcaccttcaacgatt-taattcattgcagaat 273  Q
    ||||||||||||| |||||||||||||||||||  ||| |||||||||||    
T  1178785 aaaattttgcgatgttactcaccttcaacgattcaaatccattgcagaat 1178834  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 7721418 - 7721458
Alignment:
Q  186 ctcctcctcaaggtctcatgttcaattctctctggtgtcaa 226  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  7721418 ctcctcctcaaggtctcatgttcgattctctctggtgtcaa 7721458  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 222
Target Start/End: Original strand, 2882996 - 2883035
Alignment:
Q  183 gtgctcctcctcaaggtctcatgttcaattctctctggtg 222  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  2882996 gtgctcctcctcaaggtctcaggttcaattctctctggtg 2883035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 274
Target Start/End: Original strand, 4574509 - 4574557
Alignment:
Q  227 aattttgcgattttactcaccttcaacgatt-taattcattgcagaatt 274  Q
    |||||||||| ||||||||||||||||||||  ||||||||||||||||    
T  4574509 aattttgcgactttactcaccttcaacgattcaaattcattgcagaatt 4574557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 226
Target Start/End: Original strand, 15137599 - 15137642
Alignment:
Q  183 gtgctcctcctcaaggtctcatgttcaattctctctggtgtcaa 226  Q
    ||||||||||||||||||||| |||  |||||||||||||||||    
T  15137599 gtgctcctcctcaaggtctcaggttagattctctctggtgtcaa 15137642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 222
Target Start/End: Original strand, 21558174 - 21558213
Alignment:
Q  183 gtgctcctcctcaaggtctcatgttcaattctctctggtg 222  Q
    ||||||||||||||||||||| |||| |||||||||||||    
T  21558174 gtgctcctcctcaaggtctcaggttcgattctctctggtg 21558213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 222
Target Start/End: Complemental strand, 26459440 - 26459401
Alignment:
Q  183 gtgctcctcctcaaggtctcatgttcaattctctctggtg 222  Q
    ||||||||||||||||||||| |||| |||||||||||||    
T  26459440 gtgctcctcctcaaggtctcaggttcgattctctctggtg 26459401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 222
Target Start/End: Complemental strand, 29785331 - 29785292
Alignment:
Q  183 gtgctcctcctcaaggtctcatgttcaattctctctggtg 222  Q
    |||||||||||||||||||||||||| ||||| |||||||    
T  29785331 gtgctcctcctcaaggtctcatgttcgattctttctggtg 29785292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 226
Target Start/End: Original strand, 42712004 - 42712047
Alignment:
Q  183 gtgctcctcctcaaggtctcatgttcaattctctctggtgtcaa 226  Q
    |||||||||||||||||||||||||| |||||| || |||||||    
T  42712004 gtgctcctcctcaaggtctcatgttcgattctccctagtgtcaa 42712047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 21570060 - 21570019
Alignment:
Q  185 gctcctcctcaaggtctcatgttcaattctctctggtgtcaa 226  Q
    ||||||||||||||||||| |||| ||| |||||||||||||    
T  21570060 gctcctcctcaaggtctcaagttcgattttctctggtgtcaa 21570019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 33222423 - 33222459
Alignment:
Q  190 tcctcaaggtctcatgttcaattctctctggtgtcaa 226  Q
    |||||||||||||| |||| |||||||||||||||||    
T  33222423 tcctcaaggtctcaggttcgattctctctggtgtcaa 33222459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 226
Target Start/End: Original strand, 25627103 - 25627146
Alignment:
Q  183 gtgctcctcctcaaggtctcatgttcaattctctctggtgtcaa 226  Q
    ||||||||||||||||||||| |||| |||||||||||||||||    
T  25627103 gtgctcctcctcaaggtctcaggttcgattctctctggtgtcaa 25627146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 16457856 - 16457888
Alignment:
Q  183 gtgctcctcctcaaggtctcatgttcaattctc 215  Q
    |||||||||||||||||||||||||||||||||    
T  16457856 gtgctcctcctcaaggtctcatgttcaattctc 16457888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 222
Target Start/End: Original strand, 14285207 - 14285246
Alignment:
Q  183 gtgctcctcctcaaggtctcatgttcaattctctctggtg 222  Q
    ||||||||||||||||||||| |||| |||||||||||||    
T  14285207 gtgctcctcctcaaggtctcaggttcgattctctctggtg 14285246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 226
Target Start/End: Complemental strand, 37258396 - 37258353
Alignment:
Q  183 gtgctcctcctcaaggtctcatgttcaattctctctggtgtcaa 226  Q
    ||||||||||||||||| ||| |||| |||||||||||||||||    
T  37258396 gtgctcctcctcaaggtttcaggttcgattctctctggtgtcaa 37258353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 226
Target Start/End: Original strand, 43442242 - 43442285
Alignment:
Q  183 gtgctcctcctcaaggtctcatgttcaattctctctggtgtcaa 226  Q
    ||||||||||||||||||||| |||| |||||||||| ||||||    
T  43442242 gtgctcctcctcaaggtctcaggttcgattctctctgttgtcaa 43442285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 30883228 - 30883196
Alignment:
Q  183 gtgctcctcctcaaggtctcatgttcaattctc 215  Q
    ||||||||||||||||||||| |||||||||||    
T  30883228 gtgctcctcctcaaggtctcaagttcaattctc 30883196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 226
Target Start/End: Complemental strand, 7949484 - 7949441
Alignment:
Q  183 gtgctcctcctcaaggtctcatgttcaattctctctggtgtcaa 226  Q
    ||||||||||||||||||||| |||| |||||||||||||||||    
T  7949484 gtgctcctcctcaaggtctcaggttcgattctctctggtgtcaa 7949441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 222
Target Start/End: Complemental strand, 37109381 - 37109342
Alignment:
Q  183 gtgctcctcctcaaggtctcatgttcaattctctctggtg 222  Q
    ||||||||||||||||||||| |||| |||||||||||||    
T  37109381 gtgctcctcctcaaggtctcaggttcgattctctctggtg 37109342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 222
Target Start/End: Complemental strand, 44195005 - 44194975
Alignment:
Q  192 ctcaaggtctcatgttcaattctctctggtg 222  Q
    |||||||||||||||||||||||||||||||    
T  44195005 ctcaaggtctcatgttcaattctctctggtg 44194975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 222
Target Start/End: Original strand, 53412991 - 53413030
Alignment:
Q  183 gtgctcctcctcaaggtctcatgttcaattctctctggtg 222  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  53412991 gtgctcctcctcaaggtctcaggttcaattctctctggtg 53413030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 34062575 - 34062539
Alignment:
Q  186 ctcctcctcaaggtctcatgttcaattctctctggtg 222  Q
    |||||||||||||||||| ||||||||||||||||||    
T  34062575 ctcctcctcaaggtctcaggttcaattctctctggtg 34062539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 226
Target Start/End: Original strand, 14186693 - 14186736
Alignment:
Q  183 gtgctcctcctcaaggtctcatgttcaattctctctggtgtcaa 226  Q
    ||||||||||||||||||||| |||| |||||||| ||||||||    
T  14186693 gtgctcctcctcaaggtctcaggttcgattctctccggtgtcaa 14186736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 16354922 - 16354878
Alignment:
Q  183 gtgctcctcctcaaggtctcatgttcaattctctctggtgtcaaa 227  Q
    ||||||||||||| ||||||| |||| ||||||||||||| ||||    
T  16354922 gtgctcctcctcagggtctcaggttcgattctctctggtgccaaa 16354878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 34622568 - 34622528
Alignment:
Q  186 ctcctcctcaaggtctcatgttcaattctctctggtgtcaa 226  Q
    |||||||||||||||||| |||| ||| |||||||||||||    
T  34622568 ctcctcctcaaggtctcaggttcgattttctctggtgtcaa 34622528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 226
Target Start/End: Complemental strand, 17745286 - 17745243
Alignment:
Q  183 gtgctcctcctcaaggtctcatgttcaattctctctggtgtcaa 226  Q
    |||||||||||| ||||||||||||| |||||||||||||||||    
T  17745286 gtgctcctcctcgaggtctcatgttcgattctctctggtgtcaa 17745243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 222
Target Start/End: Original strand, 2799908 - 2799947
Alignment:
Q  183 gtgctcctcctcaaggtctcatgttcaattctctctggtg 222  Q
    ||||||||||||||||||||| |||| |||||||||||||    
T  2799908 gtgctcctcctcaaggtctcaggttcgattctctctggtg 2799947  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 222
Target Start/End: Original strand, 8904460 - 8904499
Alignment:
Q  183 gtgctcctcctcaaggtctcatgttcaattctctctggtg 222  Q
    ||||||||||||||||||||| |||| |||||||||||||    
T  8904460 gtgctcctcctcaaggtctcaagttcgattctctctggtg 8904499  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 222
Target Start/End: Complemental strand, 9165225 - 9165186
Alignment:
Q  183 gtgctcctcctcaaggtctcatgttcaattctctctggtg 222  Q
    |||||||||||||| |||||| ||||||||||||||||||    
T  9165225 gtgctcctcctcaaagtctcaggttcaattctctctggtg 9165186  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 226
Target Start/End: Complemental strand, 15786350 - 15786307
Alignment:
Q  183 gtgctcctcctcaaggtctcatgttcaattctctctggtgtcaa 226  Q
    ||||||||||||||||||||| |||| ||||||| |||||||||    
T  15786350 gtgctcctcctcaaggtctcaggttcgattctctttggtgtcaa 15786307  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 222
Target Start/End: Complemental strand, 33700803 - 33700764
Alignment:
Q  183 gtgctcctcctcaaggtctcatgttcaattctctctggtg 222  Q
    ||||||||||||||||||||| |||| |||||||||||||    
T  33700803 gtgctcctcctcaaggtctcaggttcgattctctctggtg 33700764  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 3265970 - 3266008
Alignment:
Q  183 gtgctcctcctcaaggtctcatgttcaattctctctggt 221  Q
    ||||||||||||||||||||| |||| ||||||||||||    
T  3265970 gtgctcctcctcaaggtctcaggttcgattctctctggt 3266008  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 6650642 - 6650684
Alignment:
Q  184 tgctcctcctcaaggtctcatgttcaattctctctggtgtcaa 226  Q
    ||||||||||||| |||||| |||| |||||||||||||||||    
T  6650642 tgctcctcctcaatgtctcaggttcgattctctctggtgtcaa 6650684  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 43446009 - 43446041
Alignment:
Q  183 gtgctcctcctcaaggtctcatgttcaattctc 215  Q
    |||||||||||||||||||||||||| ||||||    
T  43446009 gtgctcctcctcaaggtctcatgttcgattctc 43446041  T

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Target: scaffold0180 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 223
Target Start/End: Complemental strand, 19991 - 19952
Alignment:
Q  184 tgctcctcctcaaggtctcatgttcaattctctctggtgt 223  Q
    |||||||||||||||||||| |||| ||||||||||||||    
T  19991 tgctcctcctcaaggtctcaggttcgattctctctggtgt 19952  T

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Target: scaffold0002 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 222
Target Start/End: Complemental strand, 95001 - 94962
Alignment:
Q  183 gtgctcctcctcaaggtctcatgttcaattctctctggtg 222  Q
    ||||||||||||||||||||| |||||||| |||||||||    
T  95001 gtgctcctcctcaaggtctcaggttcaattatctctggtg 94962  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 226
Target Start/End: Original strand, 11251133 - 11251176
Alignment:
Q  183 gtgctcctcctcaaggtctcatgttcaattctctctggtgtcaa 226  Q
    ||||||||||||||||||||| |||  |||||||||||||||||    
T  11251133 gtgctcctcctcaaggtctcaggtttgattctctctggtgtcaa 11251176  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 222
Target Start/End: Complemental strand, 33839290 - 33839251
Alignment:
Q  183 gtgctcctcctcaaggtctcatgttcaattctctctggtg 222  Q
    ||||||||||||||||||||| |||||||||| |||||||    
T  33839290 gtgctcctcctcaaggtctcaggttcaattctttctggtg 33839251  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 222
Target Start/End: Original strand, 45026789 - 45026828
Alignment:
Q  183 gtgctcctcctcaaggtctcatgttcaattctctctggtg 222  Q
    |||||||||||||||||||||||||  |||||||||||||    
T  45026789 gtgctcctcctcaaggtctcatgtttgattctctctggtg 45026828  T

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Target: scaffold0238 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 2740 - 2702
Alignment:
Q  184 tgctcctcctcaaggtctcatgttcaattctctctggtg 222  Q
    |||||||||||||||||||| |||| |||||||||||||    
T  2740 tgctcctcctcaaggtctcaggttcgattctctctggtg 2702  T

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Target: scaffold0118 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 41662 - 41620
Alignment:
Q  184 tgctcctcctcaaggtctcatgttcaattctctctggtgtcaa 226  Q
    ||||||||||| |||||||| ||||||||||||||| ||||||    
T  41662 tgctcctcctcgaggtctcaggttcaattctctctgatgtcaa 41620  T

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Target: scaffold0299 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 11574 - 11614
Alignment:
Q  183 gtgctcctcctcaaggtctcatgttcaattctctctggtgt 223  Q
    |||||||||||| |||||||| |||| ||||||||||||||    
T  11574 gtgctcctcctcgaggtctcaggttcgattctctctggtgt 11614  T

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