View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16172_low_28 (Length: 254)
Name: NF16172_low_28
Description: NF16172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16172_low_28 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 12 - 254
Target Start/End: Original strand, 33049327 - 33049569
Alignment:
| Q |
12 |
tgagatgaaattaccgtcgcgtttgaagatacaaacacgcttctgccttgcaaaacacaagaagcctctatgttcatcccaacaaaacgcattagcacct |
111 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
33049327 |
tgagatgaaattaccgtcgcgtctgaagatacaaacacgcttctgcctcgcaaaacacaagaagcctctatgttcatcccaacaaaaagcatttgcacct |
33049426 |
T |
|
| Q |
112 |
ttcgcttttgtaataacagcaatagtctcaaacgtaggaagtttatgaaacgcgatggattccgataacgaaagaagaaactctctcgattccaccacct |
211 |
Q |
| |
|
|||||||| |||||||| |||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33049427 |
ttcgctttagtaataaccgcaatagtttcgaaggtaggaagtttatgaaacgcgatggattccgataacgaaagaagaaactctctcgattccaccacct |
33049526 |
T |
|
| Q |
212 |
gcattgacaccacagccttcttagcgaatccttttacgtttct |
254 |
Q |
| |
|
||| |||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
33049527 |
gcaatgacaccacagccttctttgcgaatccatttacgtttct |
33049569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 239
Target Start/End: Complemental strand, 7674366 - 7674212
Alignment:
| Q |
85 |
tcatcccaacaaaacgcattagcacctttcgcttttgtaataacagcaatagtctcaaacgtaggaagtttatgaaacgcgatggattccgataacgaaa |
184 |
Q |
| |
|
|||||||| |||||| ||||||| ||||| ||||| |||||||| || ||||| || || | || | | ||||||| ||||| ||||| || | ||| | |
|
|
| T |
7674366 |
tcatcccagcaaaacacattagctcctttagctttcgtaataaccgctatagtttccaaacttggtaatctatgaaaagcgattgattcagaaagcgata |
7674267 |
T |
|
| Q |
185 |
gaagaaactctctcgattccaccacctgcattgacaccacagccttcttagcgaa |
239 |
Q |
| |
|
|||||| |||||||||||| || || | ||||||||| |||| |||||| ||||| |
|
|
| T |
7674266 |
gaagaagctctctcgattctacaacttccattgacacaacaggcttcttcgcgaa |
7674212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University