View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16172_low_33 (Length: 237)
Name: NF16172_low_33
Description: NF16172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16172_low_33 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 16383228 - 16383008
Alignment:
| Q |
1 |
tcatttaaacatttcatcaaatgtgattacagcttagggtatcagggctaatcagcaatggcccttatgttcttattgtagattgtgatatgaattgtaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16383228 |
tcatttaaacatttcatcaaatgtgattacagcttagggtatcagggctaatcagcaatggcccttatgttcttattgtagattgtgatatgaattgtaa |
16383129 |
T |
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| Q |
101 |
tgattcatcatcagccaaacaatccatgtgcttttttcttgatcctaaaatatctcaagatcttgcttttgtccaattcccacaaatgtttcacaacatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
16383128 |
tgattcatcatcagccaaacaatccatgtgcttttttcttgatcctaaaatatctcaagatcttgcttttgtccaattccctcaaatgtttcacaacatt |
16383029 |
T |
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| Q |
201 |
agcaagaaagacatatataat |
221 |
Q |
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||||||||||||||||||||| |
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| T |
16383028 |
agcaagaaagacatatataat |
16383008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 15462 - 15679
Alignment:
| Q |
1 |
tcatttaaacatttcatcaaatgtgattacagcttagggtatcagggctaatcagcaatggcccttatgttcttattgtagattgtgatatgaattgtaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||| |
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| T |
15462 |
tcatttaaacatttcatcaaatgtgattacagcttagggtgtcagggctaatcagcaatggaccttatgttcttgtggtagattgtgatatgaattgtaa |
15561 |
T |
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| Q |
101 |
tgattcatcatcagccaaacaatccatgtgcttttttcttgatcctaaaatatctcaagatcttgcttttgtccaattcccacaaatgtttcacaacatt |
200 |
Q |
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| T |
15562 |
tgatgcatcatcagccaaacaatctatgtgcttttttcttgatcctgaaacctctaaagatgttgcttttgttcaattccctcaaatgtttcacaacctt |
15661 |
T |
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| Q |
201 |
agcaagaaagacatatat |
218 |
Q |
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| T |
15662 |
agcaagaaagacatatat |
15679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 30 - 218
Target Start/End: Complemental strand, 17582106 - 17581918
Alignment:
| Q |
30 |
cagcttagggtatcagggctaatcagcaatggcccttatgttcttattgtagattgtgatatgaattgtaatgattcatcatcagccaaacaatccatgt |
129 |
Q |
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| T |
17582106 |
cagctaagggtttcagggctaatcagcaatggcccttatgtacttgtcttagattgtgatatgaattgtaatgattcatcatcagccaaacaatccatgt |
17582007 |
T |
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| Q |
130 |
gcttttttcttgatcctaaaatatctcaagatcttgcttttgtccaattcccacaaatgtttcacaacattagcaagaaagacatatat |
218 |
Q |
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| T |
17582006 |
gcttttttcttgatcctgaaacctccaaagatcttgcttttgtccaattccctcaaatgtttcacaacctcagcaagaaagatatatat |
17581918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 49 - 214
Target Start/End: Original strand, 271589 - 271754
Alignment:
| Q |
49 |
taatcagcaatggcccttatgttcttattgtagattgtgatatgaattgtaatgattcatcatcagccaaacaatccatgtgcttttttcttgatcctaa |
148 |
Q |
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||||||||||||| |||||||| ||| || || ||||||||| |||||||||| |||| |||||||||||| ||||||| || ||||||||||| | |
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| T |
271589 |
taatcagcaatggaccttatgtacttgcagtggactgtgatatgtattgtaatgacccatcttcagccaaacaagccatgtgtttctttcttgatccaga |
271688 |
T |
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| Q |
149 |
aatatctcaagatcttgcttttgtccaattcccacaaatgtttcacaacattagcaagaaagacat |
214 |
Q |
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|| ||| || || |||| ||||| |||||||| ||||||||||||||| ||||||| |||||||| |
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| T |
271689 |
aacctctaaatatattgcatttgttcaattccctcaaatgtttcacaaccttagcaaaaaagacat |
271754 |
T |
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