View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16172_low_35 (Length: 231)

Name: NF16172_low_35
Description: NF16172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16172_low_35
NF16172_low_35
[»] scaffold1320 (2 HSPs)
scaffold1320 (9-162)||(1579-1732)
scaffold1320 (180-231)||(1753-1804)
[»] chr8 (27 HSPs)
chr8 (9-162)||(15078983-15079136)
chr8 (9-162)||(15167138-15167291)
chr8 (10-149)||(15163312-15163446)
chr8 (181-231)||(15079147-15079197)
chr8 (190-223)||(3456825-3456858)
chr8 (186-231)||(7968940-7968985)
chr8 (180-231)||(4830024-4830076)
chr8 (180-228)||(8837939-8837987)
chr8 (180-231)||(15167066-15167117)
chr8 (180-231)||(37570747-37570798)
chr8 (180-225)||(21557455-21557501)
chr8 (180-221)||(28580970-28581012)
chr8 (181-231)||(36588089-36588139)
chr8 (180-225)||(7987723-7987768)
chr8 (187-227)||(12714370-12714411)
chr8 (180-224)||(27571842-27571887)
chr8 (202-231)||(31511987-31512016)
chr8 (196-225)||(32115416-32115445)
chr8 (194-231)||(35682700-35682737)
chr8 (190-231)||(40919363-40919404)
chr8 (180-224)||(44632178-44632223)
chr8 (181-224)||(7147206-7147250)
chr8 (180-231)||(8020326-8020378)
chr8 (180-231)||(8881291-8881343)
chr8 (180-231)||(11709002-11709054)
chr8 (180-223)||(18422446-18422490)
chr8 (180-231)||(26799200-26799252)
[»] chr2 (28 HSPs)
chr2 (180-231)||(3197073-3197124)
chr2 (183-231)||(10991558-10991606)
chr2 (180-231)||(25395435-25395487)
chr2 (180-231)||(31815880-31815932)
chr2 (185-231)||(11560514-11560561)
chr2 (185-231)||(20120719-20120766)
chr2 (180-231)||(22267529-22267580)
chr2 (196-231)||(41542993-41543028)
chr2 (197-231)||(2429032-2429066)
chr2 (197-231)||(44488021-44488055)
chr2 (196-225)||(4238781-4238810)
chr2 (180-228)||(25603904-25603953)
chr2 (188-221)||(41682389-41682422)
chr2 (199-231)||(145024-145056)
chr2 (180-231)||(660815-660867)
chr2 (180-223)||(3196584-3196628)
chr2 (180-231)||(10156033-10156085)
chr2 (180-231)||(20565068-20565120)
chr2 (180-231)||(22523005-22523057)
chr2 (180-223)||(24581010-24581054)
chr2 (180-231)||(24592839-24592891)
chr2 (181-228)||(27244676-27244724)
chr2 (199-231)||(28202422-28202454)
chr2 (196-231)||(28644541-28644577)
chr2 (180-231)||(29544643-29544695)
chr2 (180-231)||(29809342-29809394)
chr2 (180-231)||(31476987-31477039)
chr2 (188-231)||(44026624-44026668)
[»] chr1 (22 HSPs)
chr1 (180-231)||(6219856-6219907)
chr1 (180-231)||(27533259-27533311)
chr1 (181-231)||(3573319-3573369)
chr1 (181-231)||(41926838-41926888)
chr1 (180-224)||(13401620-13401665)
chr1 (190-231)||(30548095-30548136)
chr1 (180-231)||(29042553-29042605)
chr1 (199-231)||(30678826-30678858)
chr1 (184-231)||(33153877-33153925)
chr1 (193-228)||(48639021-48639056)
chr1 (180-225)||(17917131-17917177)
chr1 (190-231)||(25165095-25165137)
chr1 (180-225)||(43356457-43356503)
chr1 (189-229)||(21341202-21341243)
chr1 (190-223)||(27023659-27023692)
chr1 (180-231)||(2613738-2613790)
chr1 (180-231)||(12268977-12269029)
chr1 (180-231)||(17139510-17139562)
chr1 (196-224)||(28257736-28257764)
chr1 (180-231)||(31962463-31962515)
chr1 (180-231)||(32560989-32561041)
chr1 (180-216)||(42267231-42267267)
[»] chr7 (22 HSPs)
chr7 (180-231)||(7388032-7388084)
chr7 (193-231)||(21411535-21411573)
chr7 (190-230)||(3953458-3953498)
chr7 (180-231)||(27833394-27833446)
chr7 (180-231)||(21136847-21136898)
chr7 (190-229)||(25128951-25128990)
chr7 (180-231)||(35001124-35001175)
chr7 (190-231)||(23221408-23221450)
chr7 (180-225)||(37325977-37326023)
chr7 (201-231)||(40187651-40187681)
chr7 (180-225)||(42227798-42227844)
chr7 (180-225)||(44868148-44868194)
chr7 (186-231)||(16355529-16355574)
chr7 (196-225)||(36755036-36755065)
chr7 (196-225)||(36760833-36760862)
chr7 (180-221)||(44717389-44717430)
chr7 (180-223)||(3536247-3536291)
chr7 (180-231)||(5579709-5579761)
chr7 (180-231)||(7994877-7994929)
chr7 (183-231)||(18505654-18505702)
chr7 (180-231)||(19599161-19599213)
chr7 (180-231)||(46849100-46849152)
[»] chr6 (14 HSPs)
chr6 (180-224)||(32409172-32409216)
chr6 (185-224)||(25023649-25023688)
chr6 (180-225)||(24623310-24623356)
chr6 (180-231)||(788882-788934)
chr6 (180-223)||(15169955-15169999)
chr6 (180-223)||(15178727-15178771)
chr6 (180-231)||(8575570-8575621)
chr6 (180-231)||(11456369-11456420)
chr6 (196-231)||(16390445-16390480)
chr6 (190-231)||(4826306-4826348)
chr6 (180-231)||(8629689-8629741)
chr6 (180-228)||(14610000-14610048)
chr6 (180-231)||(14918293-14918345)
chr6 (180-231)||(20744154-20744206)
[»] chr5 (23 HSPs)
chr5 (180-231)||(19647501-19647553)
chr5 (180-225)||(29695037-29695083)
chr5 (186-224)||(43135193-43135231)
chr5 (180-225)||(20125048-20125093)
chr5 (180-231)||(15889427-15889479)
chr5 (180-231)||(37054262-37054314)
chr5 (180-231)||(11720910-11720961)
chr5 (180-231)||(39914917-39914968)
chr5 (185-231)||(21316898-21316944)
chr5 (193-231)||(24485715-24485753)
chr5 (200-229)||(8682408-8682437)
chr5 (200-229)||(21657412-21657441)
chr5 (198-231)||(27651542-27651575)
chr5 (196-225)||(39963515-39963544)
chr5 (201-229)||(1512873-1512901)
chr5 (180-231)||(3052295-3052347)
chr5 (180-231)||(6489023-6489075)
chr5 (180-231)||(10199035-10199087)
chr5 (180-231)||(12159394-12159446)
chr5 (180-231)||(16701574-16701626)
chr5 (190-218)||(21052998-21053026)
chr5 (188-231)||(27545158-27545202)
chr5 (196-228)||(41630122-41630154)
[»] chr3 (25 HSPs)
chr3 (180-231)||(7464484-7464536)
chr3 (180-231)||(5534695-5534746)
chr3 (190-231)||(43777060-43777101)
chr3 (180-231)||(16980347-16980399)
chr3 (185-225)||(42269320-42269360)
chr3 (180-223)||(45334213-45334257)
chr3 (180-231)||(4564625-4564676)
chr3 (180-223)||(23332674-23332717)
chr3 (197-231)||(12408194-12408228)
chr3 (180-225)||(25727960-25728006)
chr3 (197-231)||(26973377-26973411)
chr3 (180-229)||(34899115-34899165)
chr3 (197-231)||(36690028-36690062)
chr3 (193-231)||(46226084-46226122)
chr3 (180-228)||(17755140-17755189)
chr3 (180-228)||(19056460-19056509)
chr3 (180-224)||(24521671-24521716)
chr3 (202-231)||(55494705-55494734)
chr3 (180-231)||(14030728-14030780)
chr3 (196-224)||(22843487-22843515)
chr3 (180-231)||(29631202-29631254)
chr3 (180-231)||(38898202-38898254)
chr3 (180-231)||(39779040-39779092)
chr3 (180-231)||(48315017-48315069)
chr3 (181-221)||(49223021-49223061)
[»] chr4 (22 HSPs)
chr4 (180-231)||(17656787-17656838)
chr4 (180-225)||(21649300-21649346)
chr4 (180-225)||(48159699-48159745)
chr4 (180-231)||(21318246-21318298)
chr4 (180-231)||(22164262-22164314)
chr4 (196-231)||(22411780-22411815)
chr4 (196-231)||(36071160-36071195)
chr4 (201-231)||(23160056-23160086)
chr4 (182-231)||(36479007-36479057)
chr4 (190-231)||(2587704-2587745)
chr4 (190-231)||(6586157-6586198)
chr4 (190-231)||(29228746-29228787)
chr4 (180-225)||(37462133-37462178)
chr4 (185-225)||(50650925-50650966)
chr4 (180-231)||(9028065-9028117)
chr4 (180-231)||(11949756-11949808)
chr4 (203-231)||(14197448-14197476)
chr4 (180-223)||(17948129-17948173)
chr4 (199-231)||(25999413-25999445)
chr4 (184-223)||(37005516-37005556)
chr4 (180-223)||(50380829-50380873)
chr4 (190-225)||(56096226-56096262)
[»] scaffold1063 (1 HSPs)
scaffold1063 (201-229)||(1075-1103)
[»] scaffold0021 (1 HSPs)
scaffold0021 (180-231)||(161157-161209)
[»] scaffold0011 (1 HSPs)
scaffold0011 (196-224)||(189982-190010)


Alignment Details
Target: scaffold1320 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: scaffold1320
Description:

Target: scaffold1320; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 9 - 162
Target Start/End: Original strand, 1579 - 1732
Alignment:
Q  9 acatcatcatcagcttcttgcaacttcaaccagtcttctgaaaaagttacaagaaataaatacaaattgcaattcaattccagaaaacattttcttttaa 108  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1579 acatcatcatcagcttcttgcaacttcaaccagtcctctgaaaaagttacaagaaataaatacaaattgcaattcagttccagaaaacattttcttttaa 1678  T
Q  109 tttcgtgttttaactaatagttataaattgtaaaaatatcacacttaaagtcag 162  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  1679 tttcgtgttttcactaatagttataaattgtaaaaatatcacactaaaagtcag 1732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1320; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 1753 - 1804
Alignment:
Q  180 gtggtcgggatttgaacccgaaccttacatatattatgcattgtccctacca 231  Q
    ||||||||| ||||||||| |||||||  ||||||||||||||| |||||||    
T  1753 gtggtcggggtttgaaccctaaccttatgtatattatgcattgttcctacca 1804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 9 - 162
Target Start/End: Original strand, 15078983 - 15079136
Alignment:
Q  9 acatcatcatcagcttcttgcaacttcaaccagtcttctgaaaaagttacaagaaataaatacaaattgcaattcaattccagaaaacattttcttttaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  15078983 acatcatcatcagcttcttgcaacttcaaccagtcttctgaaaaagttacaagaaataaatacaatttgcaattcagttccagaaaacattttcttttaa 15079082  T
Q  109 tttcgtgttttaactaatagttataaattgtaaaaatatcacacttaaagtcag 162  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  15079083 tttcgtgttttcactaatagttataaattgtaaaaatatcacactaaaagtcag 15079136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 9 - 162
Target Start/End: Complemental strand, 15167291 - 15167138
Alignment:
Q  9 acatcatcatcagcttcttgcaacttcaaccagtcttctgaaaaagttacaagaaataaatacaaattgcaattcaattccagaaaacattttcttttaa 108  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  15167291 acatcatcattagcttcttgcaacttcaaccagtcctctgaaaaagttacaagaaataaatacaaattgcaattcagttccagaaaacattttcttttaa 15167192  T
Q  109 tttcgtgttttaactaatagttataaattgtaaaaatatcacacttaaagtcag 162  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  15167191 tttcgtgttttcactaatagttataaattgtaaaaatatcacactaaaagtcag 15167138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 15163446 - 15163312
Alignment:
Q  10 catcatcatcagcttcttgcaacttcaaccagtcttctgaaaaagttacaagaaataaatacaaattgcaattcaattccagaaaacattttcttttaat 109  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||| |||||||||||  |||||||||||    
T  15163446 catcatcatcagcttcttgcaacttcaaccagtcctctgaaaaagttaaaagaaataaatac-aattgcaattcagttccagaaaac--tttcttttaat 15163350  T
Q  110 ttcgtgttttaactaatagttataaattgtaaaaatatca 149  Q
    ||| |||||| ||||||| |  ||||| ||||||||||||    
T  15163349 ttcatgttttcactaataat--taaatcgtaaaaatatca 15163312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 231
Target Start/End: Original strand, 15079147 - 15079197
Alignment:
Q  181 tggtcgggatttgaacccgaaccttacatatattatgcattgtccctacca 231  Q
    ||||||||||||||| |  |||||| |||||||||||||||||||||||||    
T  15079147 tggtcgggatttgaatctaaaccttgcatatattatgcattgtccctacca 15079197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 223
Target Start/End: Original strand, 3456825 - 3456858
Alignment:
Q  190 tttgaacccgaaccttacatatattatgcattgt 223  Q
    ||||||||||||||||||||||||||||||||||    
T  3456825 tttgaacccgaaccttacatatattatgcattgt 3456858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 7968940 - 7968985
Alignment:
Q  186 gggatttgaacccgaaccttacatatattatgcattgtccctacca 231  Q
    |||||||||||||| ||||| ||||||||||||||||||| |||||    
T  7968940 gggatttgaacccggaccttgcatatattatgcattgtccttacca 7968985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 4830076 - 4830024
Alignment:
Q  180 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtccctacca 231  Q
    |||||||||||| |||||| ||||||| ||||||||||||||||||| |||||    
T  4830076 gtggtcgggattcgaaccccgaaccttgcatatattatgcattgtccatacca 4830024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 8837987 - 8837939
Alignment:
Q  180 gtggtcgggatttgaacccgaaccttacatatattatgcattgtcccta 228  Q
    |||||||| ||||||||||| |||||  |||||||||||||||||||||    
T  8837987 gtggtcggaatttgaacccggaccttgtatatattatgcattgtcccta 8837939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 15167117 - 15167066
Alignment:
Q  180 gtggtcgggatttgaacccgaaccttacatatattatgcattgtccctacca 231  Q
    ||||||||| ||||||||| |||||||  ||||||||||||||| |||||||    
T  15167117 gtggtcggggtttgaaccctaaccttatgtatattatgcattgttcctacca 15167066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 37570747 - 37570798
Alignment:
Q  180 gtggtcgggatttgaacccgaaccttacatatattatgcattgtccctacca 231  Q
    ||||||||| ||||||||| |||||||||||| ||||| ||||||| |||||    
T  37570747 gtggtcggggtttgaaccccaaccttacatatgttatgtattgtccatacca 37570798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 21557501 - 21557455
Alignment:
Q  180 gtggtcgggatttgaacc-cgaaccttacatatattatgcattgtcc 225  Q
    |||||||||||| ||||| || |||||||||||||||||||||||||    
T  21557501 gtggtcgggattcgaacctcggaccttacatatattatgcattgtcc 21557455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 28581012 - 28580970
Alignment:
Q  180 gtggtcgggatttgaaccc-gaaccttacatatattatgcatt 221  Q
    ||||||||||||||||||| ||||||||||||| |||||||||    
T  28581012 gtggtcgggatttgaaccccgaaccttacatattttatgcatt 28580970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 231
Target Start/End: Original strand, 36588089 - 36588139
Alignment:
Q  181 tggtcgggatttgaacccgaaccttacatatattatgcattgtccctacca 231  Q
    |||||||| ||||| | ||||||||||||||||||| |||||| |||||||    
T  36588089 tggtcggggtttgatcacgaaccttacatatattatacattgttcctacca 36588139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 7987723 - 7987768
Alignment:
Q  180 gtggtcgggatttgaacccgaaccttacatatattatgcattgtcc 225  Q
    |||||||| ||||||||||| ||||| ||||||||||| |||||||    
T  7987723 gtggtcggaatttgaacccggaccttgcatatattatgtattgtcc 7987768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 12714370 - 12714411
Alignment:
Q  187 ggatttgaaccc-gaaccttacatatattatgcattgtccct 227  Q
    |||||||||||| ||||||| |||||||||||||||||||||    
T  12714370 ggatttgaaccccgaaccttgcatatattatgcattgtccct 12714411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 27571842 - 27571887
Alignment:
Q  180 gtggtcgggatttgaacccgaa-ccttacatatattatgcattgtc 224  Q
    ||||||||||||||||||| || |||| ||||||||||||||||||    
T  27571842 gtggtcgggatttgaaccccaaaccttgcatatattatgcattgtc 27571887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 231
Target Start/End: Complemental strand, 31512016 - 31511987
Alignment:
Q  202 ccttacatatattatgcattgtccctacca 231  Q
    ||||||||||||||||||||||||||||||    
T  31512016 ccttacatatattatgcattgtccctacca 31511987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 225
Target Start/End: Original strand, 32115416 - 32115445
Alignment:
Q  196 cccgaaccttacatatattatgcattgtcc 225  Q
    ||||||||||||||||||||||||||||||    
T  32115416 cccgaaccttacatatattatgcattgtcc 32115445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 35682700 - 35682737
Alignment:
Q  194 aacccgaaccttacatatattatgcattgtccctacca 231  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  35682700 aacccgaaccttacatatattatggattgtccgtacca 35682737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 40919363 - 40919404
Alignment:
Q  190 tttgaacccgaaccttacatatattatgcattgtccctacca 231  Q
    |||||||||| ||||| ||||||||||||||||| |||||||    
T  40919363 tttgaacccggaccttgcatatattatgcattgttcctacca 40919404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 44632178 - 44632223
Alignment:
Q  180 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtc 224  Q
    ||||||||| ||||||||| |||||||| |||||||||||||||||    
T  44632178 gtggtcggggtttgaaccccgaaccttatatatattatgcattgtc 44632223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 7147206 - 7147250
Alignment:
Q  181 tggtcgggatttgaacc-cgaaccttacatatattatgcattgtc 224  Q
    |||||||| |||||||| ||||||||||||||||||| |||||||    
T  7147206 tggtcggggtttgaaccacgaaccttacatatattatacattgtc 7147250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 8020378 - 8020326
Alignment:
Q  180 gtggtcgggatttgaa-cccgaaccttacatatattatgcattgtccctacca 231  Q
    ||||| ||| |||||| ||||||||||||||||||||||| |||| |||||||    
T  8020378 gtggttggggtttgaatcccgaaccttacatatattatgcgttgttcctacca 8020326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 8881343 - 8881291
Alignment:
Q  180 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtccctacca 231  Q
    |||| |||| ||||||||| | ||||| |||||||||||||||||||||||||    
T  8881343 gtggccggggtttgaaccctggaccttgcatatattatgcattgtccctacca 8881291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 11709054 - 11709002
Alignment:
Q  180 gtggtcgggatttgaacc-cgaaccttacatatattatgcattgtccctacca 231  Q
    ||||||||| |||||||  || ||||| |||||||||||||||||||||||||    
T  11709054 gtggtcggggtttgaacttcggaccttgcatatattatgcattgtccctacca 11709002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 223
Target Start/End: Original strand, 18422446 - 18422490
Alignment:
Q  180 gtggtcgggatttgaa-cccgaaccttacatatattatgcattgt 223  Q
    ||||| ||| |||||| ||||||||||||||||||||||||||||    
T  18422446 gtggttggggtttgaatcccgaaccttacatatattatgcattgt 18422490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 26799252 - 26799200
Alignment:
Q  180 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtccctacca 231  Q
    ||||||||| ||| ||||| ||||||| ||||| |||||||||||||||||||    
T  26799252 gtggtcggggttttaaccccgaaccttgcatattttatgcattgtccctacca 26799200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 3197073 - 3197124
Alignment:
Q  180 gtggtcgggatttgaacccgaaccttacatatattatgcattgtccctacca 231  Q
    ||||||||| |||||| ||||||||| |||||||||||||||||||||||||    
T  3197073 gtggtcggggtttgaatccgaaccttgcatatattatgcattgtccctacca 3197124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 10991606 - 10991558
Alignment:
Q  183 gtcgggatttgaacccgaaccttacatatattatgcattgtccctacca 231  Q
    ||||||||| ||||||| ||||||||||||||||| ||||||| |||||    
T  10991606 gtcgggattcgaacccggaccttacatatattatgtattgtccttacca 10991558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 25395435 - 25395487
Alignment:
Q  180 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtccctacca 231  Q
    ||||||||||||||||||  ||||||| ||||||||||||||||| |||||||    
T  25395435 gtggtcgggatttgaaccttgaaccttgcatatattatgcattgttcctacca 25395487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 31815880 - 31815932
Alignment:
Q  180 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtccctacca 231  Q
    ||||||||| ||||||||| | ||||| |||||||||||||||||||||||||    
T  31815880 gtggtcggggtttgaaccccggaccttgcatatattatgcattgtccctacca 31815932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 231
Target Start/End: Complemental strand, 11560561 - 11560514
Alignment:
Q  185 cgggatttgaaccc-gaaccttacatatattatgcattgtccctacca 231  Q
    |||| ||||||||| ||||||| |||||||||||||||||||||||||    
T  11560561 cggggtttgaaccctgaaccttgcatatattatgcattgtccctacca 11560514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 231
Target Start/End: Original strand, 20120719 - 20120766
Alignment:
Q  185 cgggatttgaaccc-gaaccttacatatattatgcattgtccctacca 231  Q
    |||||||||||||| ||||||| ||||||||||||||||||| |||||    
T  20120719 cgggatttgaaccccgaaccttgcatatattatgcattgtccttacca 20120766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 22267580 - 22267529
Alignment:
Q  180 gtggtcgggatttgaacccgaaccttacatatattatgcattgtccctacca 231  Q
    ||||||||| ||||||| | |||||| ||||||||||||||||||| |||||    
T  22267580 gtggtcggggtttgaactcaaaccttgcatatattatgcattgtccgtacca 22267529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 231
Target Start/End: Original strand, 41542993 - 41543028
Alignment:
Q  196 cccgaaccttacatatattatgcattgtccctacca 231  Q
    |||||||||||||||||||||||||||||| |||||    
T  41542993 cccgaaccttacatatattatgcattgtccatacca 41543028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 231
Target Start/End: Complemental strand, 2429066 - 2429032
Alignment:
Q  197 ccgaaccttacatatattatgcattgtccctacca 231  Q
    ||||||||||||||||||||||||||||| |||||    
T  2429066 ccgaaccttacatatattatgcattgtccttacca 2429032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 231
Target Start/End: Original strand, 44488021 - 44488055
Alignment:
Q  197 ccgaaccttacatatattatgcattgtccctacca 231  Q
    ||||||||||||||||||||||||||||| |||||    
T  44488021 ccgaaccttacatatattatgcattgtccttacca 44488055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 225
Target Start/End: Complemental strand, 4238810 - 4238781
Alignment:
Q  196 cccgaaccttacatatattatgcattgtcc 225  Q
    ||||||||||||||||||||||||||||||    
T  4238810 cccgaaccttacatatattatgcattgtcc 4238781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 25603904 - 25603953
Alignment:
Q  180 gtggtcgggatttgaacccgaa-ccttacatatattatgcattgtcccta 228  Q
    |||||| |||||||||||| || ||||| |||||||||||||||||||||    
T  25603904 gtggtcaggatttgaaccccaaaccttatatatattatgcattgtcccta 25603953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 221
Target Start/End: Original strand, 41682389 - 41682422
Alignment:
Q  188 gatttgaacccgaaccttacatatattatgcatt 221  Q
    ||||||||||| ||||||||||||||||||||||    
T  41682389 gatttgaaccctaaccttacatatattatgcatt 41682422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 145024 - 145056
Alignment:
Q  199 gaaccttacatatattatgcattgtccctacca 231  Q
    ||||||||||||||||||||||||||| |||||    
T  145024 gaaccttacatatattatgcattgtccatacca 145056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 660815 - 660867
Alignment:
Q  180 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtccctacca 231  Q
    ||||||||| ||||||||| | ||||| ||||||||||||||||||| |||||    
T  660815 gtggtcggggtttgaaccctggaccttgcatatattatgcattgtccatacca 660867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 223
Target Start/End: Complemental strand, 3196628 - 3196584
Alignment:
Q  180 gtggtcgggatttgaacc-cgaaccttacatatattatgcattgt 223  Q
    ||||||| |||||||| | ||||||||||||||||||||||||||    
T  3196628 gtggtcgagatttgaatctcgaaccttacatatattatgcattgt 3196584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 10156085 - 10156033
Alignment:
Q  180 gtggtcgggatttgaac-ccgaaccttacatatattatgcattgtccctacca 231  Q
    |||||||||||| |||| ||||||||| ||||||||||| ||||||| |||||    
T  10156085 gtggtcgggattcgaacaccgaaccttgcatatattatgtattgtccttacca 10156033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 20565068 - 20565120
Alignment:
Q  180 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtccctacca 231  Q
    ||||| ||| ||||||||| | ||||| |||||||||||||||||||||||||    
T  20565068 gtggttggggtttgaaccccggaccttgcatatattatgcattgtccctacca 20565120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 22523005 - 22523057
Alignment:
Q  180 gtggtcgggatttgaacc-cgaaccttacatatattatgcattgtccctacca 231  Q
    |||| ||||||||||||| |||||||| ||||||||||| ||||||| |||||    
T  22523005 gtggccgggatttgaacctcgaaccttgcatatattatgtattgtccatacca 22523057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 223
Target Start/End: Original strand, 24581010 - 24581054
Alignment:
Q  180 gtggtcgggatttgaacc-cgaaccttacatatattatgcattgt 223  Q
    ||||||||| |||||||| |||||||| |||||||||||||||||    
T  24581010 gtggtcggggtttgaacctcgaaccttgcatatattatgcattgt 24581054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 24592839 - 24592891
Alignment:
Q  180 gtggtcgggatttgaacccga-accttacatatattatgcattgtccctacca 231  Q
    |||| |||| ||||||||| | ||||| |||||||||||||||||||||||||    
T  24592839 gtggccggggtttgaaccccagaccttgcatatattatgcattgtccctacca 24592891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 27244724 - 27244676
Alignment:
Q  181 tggtcgggatttgaacccga-accttacatatattatgcattgtcccta 228  Q
    |||||||| ||||||||| | ||||| ||||||||||||||||||||||    
T  27244724 tggtcgggctttgaaccctagaccttgcatatattatgcattgtcccta 27244676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 28202454 - 28202422
Alignment:
Q  199 gaaccttacatatattatgcattgtccctacca 231  Q
    ||||||||||||||||||||||||||| |||||    
T  28202454 gaaccttacatatattatgcattgtccatacca 28202422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 231
Target Start/End: Complemental strand, 28644577 - 28644541
Alignment:
Q  196 cccgaacctt-acatatattatgcattgtccctacca 231  Q
    |||||||||| ||||||||||||||||||||||||||    
T  28644577 cccgaaccttgacatatattatgcattgtccctacca 28644541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 29544695 - 29544643
Alignment:
Q  180 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtccctacca 231  Q
    |||| |||| ||||||||| | ||||| |||||||||||||||||||||||||    
T  29544695 gtggccggggtttgaaccccggaccttgcatatattatgcattgtccctacca 29544643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 29809394 - 29809342
Alignment:
Q  180 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtccctacca 231  Q
    |||| ||||||| |||||| | ||||| |||||||||||||||||||||||||    
T  29809394 gtggccgggattcgaaccccgtacctttcatatattatgcattgtccctacca 29809342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 31477039 - 31476987
Alignment:
Q  180 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtccctacca 231  Q
    |||| |||||||||||||| |||||||  |||||||||||||| |||||||||    
T  31477039 gtggccgggatttgaaccccgaaccttgtatatattatgcattctccctacca 31476987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 231
Target Start/End: Complemental strand, 44026668 - 44026624
Alignment:
Q  188 gatttgaaccc-gaaccttacatatattatgcattgtccctacca 231  Q
    ||||||||||| |||||||||||||||||||| |||||| |||||    
T  44026668 gatttgaaccccgaaccttacatatattatgcgttgtccatacca 44026624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 6219856 - 6219907
Alignment:
Q  180 gtggtcgggatttgaacccgaaccttacatatattatgcattgtccctacca 231  Q
    |||||| ||||||||||||| ||||||||||||||||| |||||||||||||    
T  6219856 gtggtcaggatttgaacccggaccttacatatattatgtattgtccctacca 6219907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 27533311 - 27533259
Alignment:
Q  180 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtccctacca 231  Q
    ||||||||| ||||||||| ||||||| |||||||||||||||||||||||||    
T  27533311 gtggtcggggtttgaaccccgaaccttgcatatattatgcattgtccctacca 27533259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 231
Target Start/End: Original strand, 3573319 - 3573369
Alignment:
Q  181 tggtcgggatttgaacccgaaccttacatatattatgcattgtccctacca 231  Q
    |||||||||||| ||| | |||||||||||||||||||||||| |||||||    
T  3573319 tggtcgggatttaaactcaaaccttacatatattatgcattgttcctacca 3573369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 231
Target Start/End: Complemental strand, 41926888 - 41926838
Alignment:
Q  181 tggtcgggatttgaacccgaaccttacatatattatgcattgtccctacca 231  Q
    ||||||| ||| ||||||| ||||||||||||||||||||||||| |||||    
T  41926888 tggtcggaattcgaacccggaccttacatatattatgcattgtccttacca 41926838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 13401665 - 13401620
Alignment:
Q  180 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtc 224  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||    
T  13401665 gtggtcggggtttgaaccccgaaccttacatatattatgcattgtc 13401620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 30548095 - 30548136
Alignment:
Q  190 tttgaacccgaaccttacatatattatgcattgtccctacca 231  Q
    |||||||||||||||| ||||||||||||||||||| |||||    
T  30548095 tttgaacccgaaccttgcatatattatgcattgtccttacca 30548136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 29042605 - 29042553
Alignment:
Q  180 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtccctacca 231  Q
    ||||||||||||||||||| | | ||||||||||||||||||| |||||||||    
T  29042605 gtggtcgggatttgaaccccggatcttacatatattatgcattatccctacca 29042553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 30678826 - 30678858
Alignment:
Q  199 gaaccttacatatattatgcattgtccctacca 231  Q
    |||||||||||||||||||||||||||||||||    
T  30678826 gaaccttacatatattatgcattgtccctacca 30678858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 33153877 - 33153925
Alignment:
Q  184 tcgggatttgaacc-cgaaccttacatatattatgcattgtccctacca 231  Q
    ||||| |||||||| || |||||||||||||||||||||||||||||||    
T  33153877 tcggggtttgaacctcggaccttacatatattatgcattgtccctacca 33153925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 228
Target Start/End: Original strand, 48639021 - 48639056
Alignment:
Q  193 gaacccgaaccttacatatattatgcattgtcccta 228  Q
    |||||| |||||||||||||||||||||||||||||    
T  48639021 gaacccaaaccttacatatattatgcattgtcccta 48639056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 17917131 - 17917177
Alignment:
Q  180 gtggtcgggatttgaa-cccgaaccttacatatattatgcattgtcc 225  Q
    ||||||||| |||||| |||||||||||||||| |||||||||||||    
T  17917131 gtggtcggggtttgaatcccgaaccttacatattttatgcattgtcc 17917177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 25165095 - 25165137
Alignment:
Q  190 tttgaacccga-accttacatatattatgcattgtccctacca 231  Q
    ||||||||||| ||||||||||||||||||||||||| |||||    
T  25165095 tttgaacccgagaccttacatatattatgcattgtccatacca 25165137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 43356503 - 43356457
Alignment:
Q  180 gtggtcgggatttgaac-ccgaaccttacatatattatgcattgtcc 225  Q
    ||||||||| ||||||| || ||||||||||||||||||||||||||    
T  43356503 gtggtcggggtttgaactccaaaccttacatatattatgcattgtcc 43356457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 229
Target Start/End: Complemental strand, 21341243 - 21341202
Alignment:
Q  189 atttgaacc-cgaaccttacatatattatgcattgtccctac 229  Q
    ||||||||| |||||||| |||||||||||||||||||||||    
T  21341243 atttgaacctcgaaccttgcatatattatgcattgtccctac 21341202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 223
Target Start/End: Original strand, 27023659 - 27023692
Alignment:
Q  190 tttgaacccgaaccttacatatattatgcattgt 223  Q
    |||||||||||||||| |||||||||||||||||    
T  27023659 tttgaacccgaaccttgcatatattatgcattgt 27023692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 2613790 - 2613738
Alignment:
Q  180 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtccctacca 231  Q
    ||||||||| || |||||| ||||||||||||| ||||||||||||| |||||    
T  2613790 gtggtcggggttcgaaccccgaaccttacatattttatgcattgtccatacca 2613738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 12268977 - 12269029
Alignment:
Q  180 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtccctacca 231  Q
    ||||||||| ||||||||| | ||||| ||||||||||||||||| |||||||    
T  12268977 gtggtcggggtttgaaccccggaccttgcatatattatgcattgttcctacca 12269029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 17139510 - 17139562
Alignment:
Q  180 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtccctacca 231  Q
    ||||||||| ||||||||| | |||||  ||||||||||||||||||||||||    
T  17139510 gtggtcggggtttgaaccccggaccttgaatatattatgcattgtccctacca 17139562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 28257764 - 28257736
Alignment:
Q  196 cccgaaccttacatatattatgcattgtc 224  Q
    |||||||||||||||||||||||||||||    
T  28257764 cccgaaccttacatatattatgcattgtc 28257736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 31962515 - 31962463
Alignment:
Q  180 gtggtcgggatttgaacccga-accttacatatattatgcattgtccctacca 231  Q
    |||||||||||| |||||| | || |||||||||||||||||||||| |||||    
T  31962515 gtggtcgggattcgaaccctagactttacatatattatgcattgtccttacca 31962463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 32561041 - 32560989
Alignment:
Q  180 gtggtcgggatttgaa-cccgaaccttacatatattatgcattgtccctacca 231  Q
    |||||||||||||||| |||| ||||| |||||||||| |||||||| |||||    
T  32561041 gtggtcgggatttgaaccccggaccttgcatatattatacattgtccatacca 32560989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 42267267 - 42267231
Alignment:
Q  180 gtggtcgggatttgaacccgaaccttacatatattat 216  Q
    |||||||||||||||||| | ||||||||||||||||    
T  42267267 gtggtcgggatttgaacctggaccttacatatattat 42267231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 7388032 - 7388084
Alignment:
Q  180 gtggtcgggatttgaa-cccgaaccttacatatattatgcattgtccctacca 231  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||| ||||    
T  7388032 gtggtcggggtttgaatcccgaaccttacatatattatgcattgtcccaacca 7388084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 193 - 231
Target Start/End: Complemental strand, 21411573 - 21411535
Alignment:
Q  193 gaacccgaaccttacatatattatgcattgtccctacca 231  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  21411573 gaacccgaactttacatatattatgcattgtccctacca 21411535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 230
Target Start/End: Complemental strand, 3953498 - 3953458
Alignment:
Q  190 tttgaacccgaaccttacatatattatgcattgtccctacc 230  Q
    |||||||||||||||| ||||||||||||||||||| ||||    
T  3953498 tttgaacccgaaccttgcatatattatgcattgtccatacc 3953458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 27833394 - 27833446
Alignment:
Q  180 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtccctacca 231  Q
    ||||||||| ||||||||| | ||||||||||||||||||||||||| |||||    
T  27833394 gtggtcggggtttgaaccccggaccttacatatattatgcattgtccttacca 27833446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 21136898 - 21136847
Alignment:
Q  180 gtggtcgggatttgaacccgaaccttacatatattatgcattgtccctacca 231  Q
    ||||||||||||||||||  |||||| |||||||||| |||||||| |||||    
T  21136898 gtggtcgggatttgaacctcaaccttgcatatattatacattgtccatacca 21136847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 25128951 - 25128990
Alignment:
Q  190 tttgaacccgaaccttacatatattatgcattgtccctac 229  Q
    |||||||||||||||| |||||||||| ||||||||||||    
T  25128951 tttgaacccgaaccttgcatatattatacattgtccctac 25128990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 35001124 - 35001175
Alignment:
Q  180 gtggtcgggatttgaacccgaaccttacatatattatgcattgtccctacca 231  Q
    ||||||||| ||||||| | ||||||| ||||||||||||||||| ||||||    
T  35001124 gtggtcggggtttgaactcaaaccttaaatatattatgcattgtctctacca 35001175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 23221450 - 23221408
Alignment:
Q  190 tttgaacc-cgaaccttacatatattatgcattgtccctacca 231  Q
    |||||||| ||||||||||||||||||||||||||| ||||||    
T  23221450 tttgaaccacgaaccttacatatattatgcattgtctctacca 23221408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 37325977 - 37326023
Alignment:
Q  180 gtggtcgggatttgaacccgaaccttacatatatt-atgcattgtcc 225  Q
    |||| |||| ||||||||||||||||||||||||| |||||||||||    
T  37325977 gtggccggggtttgaacccgaaccttacatatattaatgcattgtcc 37326023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 231
Target Start/End: Original strand, 40187651 - 40187681
Alignment:
Q  201 accttacatatattatgcattgtccctacca 231  Q
    |||||||||||||||||||||||||||||||    
T  40187651 accttacatatattatgcattgtccctacca 40187681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 42227798 - 42227844
Alignment:
Q  180 gtggtcgggatttgaacc-cgaaccttacatatattatgcattgtcc 225  Q
    ||||||||  |||||||| ||||||||||||||||||||||||||||    
T  42227798 gtggtcggagtttgaacctcgaaccttacatatattatgcattgtcc 42227844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 44868148 - 44868194
Alignment:
Q  180 gtggtcgggatttgaacc-cgaaccttacatatattatgcattgtcc 225  Q
    |||||||| ||||||||| || |||||||||||||||||||||||||    
T  44868148 gtggtcggaatttgaacctcggaccttacatatattatgcattgtcc 44868194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 231
Target Start/End: Complemental strand, 16355574 - 16355529
Alignment:
Q  186 gggatttgaacccgaaccttacatatattatgcattgtccctacca 231  Q
    ||||||||||||| ||||||||||||||||| || |||| ||||||    
T  16355574 gggatttgaaccccaaccttacatatattatacaatgtctctacca 16355529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 225
Target Start/End: Complemental strand, 36755065 - 36755036
Alignment:
Q  196 cccgaaccttacatatattatgcattgtcc 225  Q
    ||||||||||||||||||||||||||||||    
T  36755065 cccgaaccttacatatattatgcattgtcc 36755036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 225
Target Start/End: Complemental strand, 36760862 - 36760833
Alignment:
Q  196 cccgaaccttacatatattatgcattgtcc 225  Q
    ||||||||||||||||||||||||||||||    
T  36760862 cccgaaccttacatatattatgcattgtcc 36760833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 44717430 - 44717389
Alignment:
Q  180 gtggtcgggatttgaacccgaaccttacatatattatgcatt 221  Q
    ||||||||||||||||| |||| |||||||||||||| ||||    
T  44717430 gtggtcgggatttgaactcgaatcttacatatattatacatt 44717389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 223
Target Start/End: Original strand, 3536247 - 3536291
Alignment:
Q  180 gtggtcgggatttgaa-cccgaaccttacatatattatgcattgt 223  Q
    ||||||||  |||||| ||||||||||||||||||||||||||||    
T  3536247 gtggtcggagtttgaatcccgaaccttacatatattatgcattgt 3536291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 5579761 - 5579709
Alignment:
Q  180 gtggtcgggatttgaacccga-accttacatatattatgcattgtccctacca 231  Q
    ||||||||| ||||||||| | ||||| ||||||||||||| |||||||||||    
T  5579761 gtggtcggggtttgaaccccagaccttgcatatattatgcactgtccctacca 5579709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 7994877 - 7994929
Alignment:
Q  180 gtggtcgggatttgaacccga-accttacatatattatgcattgtccctacca 231  Q
    ||||||||| ||||||||| | |||||||||||||||||  ||||||||||||    
T  7994877 gtggtcggggtttgaaccccagaccttacatatattatgttttgtccctacca 7994929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 18505654 - 18505702
Alignment:
Q  183 gtcgggatttgaacccgaaccttacatatattatgcattgtccctacca 231  Q
    |||||| |||||||||| | ||| ||||| |||||||||||||||||||    
T  18505654 gtcggggtttgaacccggatcttgcatattttatgcattgtccctacca 18505702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 19599213 - 19599161
Alignment:
Q  180 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtccctacca 231  Q
    ||||||||| ||||||||| | ||||| ||||||||||||||||||| |||||    
T  19599213 gtggtcggggtttgaaccccggaccttgcatatattatgcattgtccatacca 19599161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 46849100 - 46849152
Alignment:
Q  180 gtggtcgggatttgaac-ccgaaccttacatatattatgcattgtccctacca 231  Q
    ||||||||| ||||||| || ||| ||||||||||||||||||||| ||||||    
T  46849100 gtggtcggggtttgaactccaaactttacatatattatgcattgtctctacca 46849152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 32409172 - 32409216
Alignment:
Q  180 gtggtcgggatttgaacccgaaccttacatatattatgcattgtc 224  Q
    ||||||| | |||||||||||||||||||||||||||||||||||    
T  32409172 gtggtcgaggtttgaacccgaaccttacatatattatgcattgtc 32409216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 224
Target Start/End: Complemental strand, 25023688 - 25023649
Alignment:
Q  185 cgggatttgaacccgaaccttacatatattatgcattgtc 224  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  25023688 cgggatttgaacccgaactttacatatattatgcattgtc 25023649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 24623310 - 24623356
Alignment:
Q  180 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtcc 225  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||    
T  24623310 gtggtcggggtttgaaccccgaaccttacatatattatgcattgtcc 24623356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 788934 - 788882
Alignment:
Q  180 gtggtcgggatttgaac-ccgaaccttacatatattatgcattgtccctacca 231  Q
    ||||||||| ||||||| ||||||||| ||||||||||||||||||| |||||    
T  788934 gtggtcggggtttgaactccgaaccttgcatatattatgcattgtccttacca 788882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 223
Target Start/End: Complemental strand, 15169999 - 15169955
Alignment:
Q  180 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgt 223  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||    
T  15169999 gtggtcggggtttgaaccccgaaccttacatatattatgcattgt 15169955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 223
Target Start/End: Complemental strand, 15178771 - 15178727
Alignment:
Q  180 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgt 223  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||    
T  15178771 gtggtcggggtttgaaccccgaaccttacatatattatgcattgt 15178727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 8575570 - 8575621
Alignment:
Q  180 gtggtcgggatttgaacccgaaccttacatatattatgcattgtccctacca 231  Q
    ||||| ||||||| ||| |||||| | |||||||||||||||||||||||||    
T  8575570 gtggttgggattttaactcgaaccatgcatatattatgcattgtccctacca 8575621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 11456369 - 11456420
Alignment:
Q  180 gtggtcgggatttgaacccgaaccttacatatattatgcattgtccctacca 231  Q
    |||| |||| |||||||||  ||||||||||||||||||||||||| |||||    
T  11456369 gtggccggggtttgaaccccgaccttacatatattatgcattgtccatacca 11456420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 231
Target Start/End: Complemental strand, 16390480 - 16390445
Alignment:
Q  196 cccgaaccttacatatattatgcattgtccctacca 231  Q
    |||| |||||||||||||||||||||||||||||||    
T  16390480 cccggaccttacatatattatgcattgtccctacca 16390445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 4826348 - 4826306
Alignment:
Q  190 tttgaacc-cgaaccttacatatattatgcattgtccctacca 231  Q
    |||||||| ||||||||||||||||||||||||||| ||||||    
T  4826348 tttgaacctcgaaccttacatatattatgcattgtctctacca 4826306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 8629689 - 8629741
Alignment:
Q  180 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtccctacca 231  Q
    ||||||| | ||||||||| ||||||| ||||||||||||||||||| |||||    
T  8629689 gtggtcgaggtttgaaccccgaaccttgcatatattatgcattgtccatacca 8629741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 14610048 - 14610000
Alignment:
Q  180 gtggtcgggatttgaacccgaaccttacatatattatgcattgtcccta 228  Q
    |||| |||| |||||||||| ||||||||||||||||  ||||||||||    
T  14610048 gtggccggggtttgaacccggaccttacatatattatagattgtcccta 14610000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 14918293 - 14918345
Alignment:
Q  180 gtggtcgggatttgaacccga-accttacatatattatgcattgtccctacca 231  Q
    ||||||||| ||||||||| | |||||  ||||||||||||||||||||||||    
T  14918293 gtggtcggggtttgaaccccagaccttgtatatattatgcattgtccctacca 14918345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 20744206 - 20744154
Alignment:
Q  180 gtggtcgggatttgaacccga-accttacatatattatgcattgtccctacca 231  Q
    ||||||||| ||||||||| | ||||| ||||||||||||||||||| |||||    
T  20744206 gtggtcggggtttgaaccccagaccttgcatatattatgcattgtccatacca 20744154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 19647501 - 19647553
Alignment:
Q  180 gtggtcgggatttgaacccga-accttacatatattatgcattgtccctacca 231  Q
    ||||||||||||||||||| | |||||||||||||||| ||||||||||||||    
T  19647501 gtggtcgggatttgaaccccagaccttacatatattatacattgtccctacca 19647553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 29695083 - 29695037
Alignment:
Q  180 gtggtcgggatttgaacc-cgaaccttacatatattatgcattgtcc 225  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||    
T  29695083 gtggtcggggtttgaaccacgaaccttacatatattatgcattgtcc 29695037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 186 - 224
Target Start/End: Original strand, 43135193 - 43135231
Alignment:
Q  186 gggatttgaacccgaaccttacatatattatgcattgtc 224  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  43135193 gggatttgaacccggaccttacatatattatgcattgtc 43135231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 20125093 - 20125048
Alignment:
Q  180 gtggtcgggatttgaacccgaaccttacatatattatgcattgtcc 225  Q
    ||||||||  |||||||||||||||| |||||||||||||||||||    
T  20125093 gtggtcggagtttgaacccgaaccttgcatatattatgcattgtcc 20125048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 15889479 - 15889427
Alignment:
Q  180 gtggtcgggatttgaacccga-accttacatatattatgcattgtccctacca 231  Q
    ||||||||| ||||||||| | ||||| |||||||||||||||||||||||||    
T  15889479 gtggtcggggtttgaaccctagaccttgcatatattatgcattgtccctacca 15889427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 37054262 - 37054314
Alignment:
Q  180 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtccctacca 231  Q
    ||||||||  ||||||||| |||||||| ||||||||||||||||||||||||    
T  37054262 gtggtcggagtttgaaccccgaaccttatatatattatgcattgtccctacca 37054314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 11720961 - 11720910
Alignment:
Q  180 gtggtcgggatttgaacccgaaccttacatatattatgcattgtccctacca 231  Q
    |||| |||| |||||||||  ||||| |||||||||||||||||||||||||    
T  11720961 gtggccggggtttgaaccccgaccttgcatatattatgcattgtccctacca 11720910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 39914968 - 39914917
Alignment:
Q  180 gtggtcgggatttgaacccgaaccttacatatattatgcattgtccctacca 231  Q
    ||||||||| || ||||||| ||||| ||||||||||||||||||| |||||    
T  39914968 gtggtcggggttcgaacccggaccttgcatatattatgcattgtccttacca 39914917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 231
Target Start/End: Complemental strand, 21316944 - 21316898
Alignment:
Q  185 cgggatttgaacccgaaccttacatatattatgcattgtccctacca 231  Q
    |||| |||||||||| ||||| ||||||||||||||||||| |||||    
T  21316944 cggggtttgaacccggacctttcatatattatgcattgtccttacca 21316898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 231
Target Start/End: Complemental strand, 24485753 - 24485715
Alignment:
Q  193 gaacccgaaccttacatatattatgcattgtccctacca 231  Q
    ||||||||||||| ||||||||||||||||||| |||||    
T  24485753 gaacccgaaccttgcatatattatgcattgtccatacca 24485715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Original strand, 8682408 - 8682437
Alignment:
Q  200 aaccttacatatattatgcattgtccctac 229  Q
    ||||||||||||||||||||||||||||||    
T  8682408 aaccttacatatattatgcattgtccctac 8682437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Original strand, 21657412 - 21657441
Alignment:
Q  200 aaccttacatatattatgcattgtccctac 229  Q
    ||||||||||||||||||||||||||||||    
T  21657412 aaccttacatatattatgcattgtccctac 21657441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 231
Target Start/End: Original strand, 27651542 - 27651575
Alignment:
Q  198 cgaaccttacatatattatgcattgtccctacca 231  Q
    |||||||||||||||||||||||||||| |||||    
T  27651542 cgaaccttacatatattatgcattgtccttacca 27651575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 225
Target Start/End: Complemental strand, 39963544 - 39963515
Alignment:
Q  196 cccgaaccttacatatattatgcattgtcc 225  Q
    ||||||||||||||||||||||||||||||    
T  39963544 cccgaaccttacatatattatgcattgtcc 39963515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Complemental strand, 1512901 - 1512873
Alignment:
Q  201 accttacatatattatgcattgtccctac 229  Q
    |||||||||||||||||||||||||||||    
T  1512901 accttacatatattatgcattgtccctac 1512873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 3052347 - 3052295
Alignment:
Q  180 gtggtcgggatttgaacc-cgaaccttacatatattatgcattgtccctacca 231  Q
    ||||||| | |||||||| |||||||| |||||||||| ||||||||||||||    
T  3052347 gtggtcgaggtttgaacctcgaaccttgcatatattatacattgtccctacca 3052295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 6489075 - 6489023
Alignment:
Q  180 gtggtcgggatttgaacccga-accttacatatattatgcattgtccctacca 231  Q
    |||| |||| ||||||||| | ||||| |||||||||||||||||||||||||    
T  6489075 gtggccggggtttgaaccccagaccttgcatatattatgcattgtccctacca 6489023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 10199087 - 10199035
Alignment:
Q  180 gtggtcgggatttgaacccga-accttacatatattatgcattgtccctacca 231  Q
    |||||||||||| |||||| | |||||| |||||||||||||||||| |||||    
T  10199087 gtggtcgggattcgaaccccacaccttatatatattatgcattgtccatacca 10199035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 12159394 - 12159446
Alignment:
Q  180 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtccctacca 231  Q
    ||||||||| |||||| || |||||||||||||||||| ||||||| ||||||    
T  12159394 gtggtcggggtttgaatcctgaaccttacatatattatacattgtctctacca 12159446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 16701574 - 16701626
Alignment:
Q  180 gtggtcgggatttgaa-cccgaaccttacatatattatgcattgtccctacca 231  Q
    ||||||||| |||||| |||| ||||| |||||||||| ||||||||||||||    
T  16701574 gtggtcggggtttgaatcccggaccttgcatatattattcattgtccctacca 16701626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 218
Target Start/End: Complemental strand, 21053026 - 21052998
Alignment:
Q  190 tttgaacccgaaccttacatatattatgc 218  Q
    |||||||||||||||||||||||||||||    
T  21053026 tttgaacccgaaccttacatatattatgc 21052998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 231
Target Start/End: Original strand, 27545158 - 27545202
Alignment:
Q  188 gatttgaacc-cgaaccttacatatattatgcattgtccctacca 231  Q
    |||||||||| ||| |||| |||||||||||||||||||||||||    
T  27545158 gatttgaacctcgacccttgcatatattatgcattgtccctacca 27545202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 228
Target Start/End: Original strand, 41630122 - 41630154
Alignment:
Q  196 cccgaaccttacatatattatgcattgtcccta 228  Q
    |||||||||| ||||||||||||||||||||||    
T  41630122 cccgaaccttgcatatattatgcattgtcccta 41630154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 7464484 - 7464536
Alignment:
Q  180 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtccctacca 231  Q
    ||||||||| ||||||||| | |||||||||||||||||||||||||||||||    
T  7464484 gtggtcggggtttgaaccccggaccttacatatattatgcattgtccctacca 7464536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 5534695 - 5534746
Alignment:
Q  180 gtggtcgggatttgaacccgaaccttacatatattatgcattgtccctacca 231  Q
    |||||||||||||||||||||||||| ||||| ||| ||||||||| |||||    
T  5534695 gtggtcgggatttgaacccgaaccttgcatattttacgcattgtccatacca 5534746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 43777060 - 43777101
Alignment:
Q  190 tttgaacccgaaccttacatatattatgcattgtccctacca 231  Q
    |||||||||||||||| |||||||||||||| ||||||||||    
T  43777060 tttgaacccgaaccttgcatatattatgcatggtccctacca 43777101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 16980347 - 16980399
Alignment:
Q  180 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtccctacca 231  Q
    ||||||||||||||||||  ||||||| ||||||||||||||||||| |||||    
T  16980347 gtggtcgggatttgaaccatgaaccttgcatatattatgcattgtccttacca 16980399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 42269360 - 42269320
Alignment:
Q  185 cgggatttgaacccgaaccttacatatattatgcattgtcc 225  Q
    |||| ||||||| ||||||||||||||||||||||||||||    
T  42269360 cggggtttgaactcgaaccttacatatattatgcattgtcc 42269320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 223
Target Start/End: Complemental strand, 45334257 - 45334213
Alignment:
Q  180 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgt 223  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||    
T  45334257 gtggtcgggatttgaaccccgaaccttgcatatattatgcattgt 45334213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 4564676 - 4564625
Alignment:
Q  180 gtggtcgggatttgaacccgaaccttacatatattatgcattgtccctacca 231  Q
    ||||||| ||| |||| ||| ||||| |||||||||||||||||||||||||    
T  4564676 gtggtcgagatatgaatccggaccttgcatatattatgcattgtccctacca 4564625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 223
Target Start/End: Complemental strand, 23332717 - 23332674
Alignment:
Q  180 gtggtcgggatttgaacccgaaccttacatatattatgcattgt 223  Q
    ||||||||| |||||||| ||||| |||||||||||||||||||    
T  23332717 gtggtcggggtttgaaccagaaccatacatatattatgcattgt 23332674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 231
Target Start/End: Complemental strand, 12408228 - 12408194
Alignment:
Q  197 ccgaaccttacatatattatgcattgtccctacca 231  Q
    |||||| ||||||||||||||||||||||||||||    
T  12408228 ccgaactttacatatattatgcattgtccctacca 12408194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 25727960 - 25728006
Alignment:
Q  180 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtcc 225  Q
    ||||||||||||||||||| | ||||| |||||||||||||||||||    
T  25727960 gtggtcgggatttgaaccccggaccttgcatatattatgcattgtcc 25728006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 231
Target Start/End: Complemental strand, 26973411 - 26973377
Alignment:
Q  197 ccgaaccttacatatattatgcattgtccctacca 231  Q
    ||||||||||||||||||||||||||||| |||||    
T  26973411 ccgaaccttacatatattatgcattgtccttacca 26973377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 34899165 - 34899115
Alignment:
Q  180 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtccctac 229  Q
    ||||||||| ||||||||| | ||||| |||||||||||||||||||||||    
T  34899165 gtggtcggggtttgaaccccggaccttgcatatattatgcattgtccctac 34899115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 231
Target Start/End: Complemental strand, 36690062 - 36690028
Alignment:
Q  197 ccgaaccttacatatattatgcattgtccctacca 231  Q
    ||||||||||||||||||||||||||| |||||||    
T  36690062 ccgaaccttacatatattatgcattgttcctacca 36690028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 231
Target Start/End: Original strand, 46226084 - 46226122
Alignment:
Q  193 gaacccgaaccttacatatattatgcattgtccctacca 231  Q
    ||||||| ||||| |||||||||||||||||||||||||    
T  46226084 gaacccggaccttgcatatattatgcattgtccctacca 46226122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 17755189 - 17755140
Alignment:
Q  180 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtcccta 228  Q
    |||||||| |||||||||| ||||||||||||||||||| ||||| ||||    
T  17755189 gtggtcggaatttgaaccccgaaccttacatatattatgtattgttccta 17755140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 19056509 - 19056460
Alignment:
Q  180 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtcccta 228  Q
    |||||||| |||||||||| ||||||||||||||||||| ||||| ||||    
T  19056509 gtggtcggaatttgaaccccgaaccttacatatattatgtattgttccta 19056460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 24521716 - 24521671
Alignment:
Q  180 gtggtcgggatttgaac-ccgaaccttacatatattatgcattgtc 224  Q
    ||||||| ||||||||| ||||||||||||||| ||||||||||||    
T  24521716 gtggtcgagatttgaactccgaaccttacatattttatgcattgtc 24521671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 231
Target Start/End: Complemental strand, 55494734 - 55494705
Alignment:
Q  202 ccttacatatattatgcattgtccctacca 231  Q
    ||||||||||||||||||||||||||||||    
T  55494734 ccttacatatattatgcattgtccctacca 55494705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 14030728 - 14030780
Alignment:
Q  180 gtggtcgggatttgaac-ccgaaccttacatatattatgcattgtccctacca 231  Q
    ||||||||| ||||||| || |||||| |||||||||||| ||||||||||||    
T  14030728 gtggtcggggtttgaactccaaaccttgcatatattatgcgttgtccctacca 14030780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 22843515 - 22843487
Alignment:
Q  196 cccgaaccttacatatattatgcattgtc 224  Q
    |||||||||||||||||||||||||||||    
T  22843515 cccgaaccttacatatattatgcattgtc 22843487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 29631254 - 29631202
Alignment:
Q  180 gtggtcgggatttgaa-cccgaaccttacatatattatgcattgtccctacca 231  Q
    |||| |||| |||||| |||||||||| ||||||||||||||||||| |||||    
T  29631254 gtggccggggtttgaatcccgaaccttgcatatattatgcattgtccatacca 29631202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 38898202 - 38898254
Alignment:
Q  180 gtggtcgggatttgaacccgaa-ccttacatatattatgcattgtccctacca 231  Q
    |||||||||||| |||||| || ||||||||||||||| |||||||| |||||    
T  38898202 gtggtcgggattcgaaccctaaaccttacatatattatacattgtccttacca 38898254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 39779092 - 39779040
Alignment:
Q  180 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtccctacca 231  Q
    ||||| ||| ||||||||| ||||||| ||||||||||||||||||| |||||    
T  39779092 gtggttggggtttgaaccccgaaccttgcatatattatgcattgtccatacca 39779040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 48315017 - 48315069
Alignment:
Q  180 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtccctacca 231  Q
    ||||||||||||||||||| | ||||| ||||||||||||||| ||| |||||    
T  48315017 gtggtcgggatttgaaccccggaccttgcatatattatgcattatccttacca 48315069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 49223021 - 49223061
Alignment:
Q  181 tggtcgggatttgaacccgaaccttacatatattatgcatt 221  Q
    ||||||||||| |||||| |||||| |||||||||||||||    
T  49223021 tggtcgggattcgaaccccaaccttgcatatattatgcatt 49223061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 17656787 - 17656838
Alignment:
Q  180 gtggtcgggatttgaacccgaaccttacatatattatgcattgtccctacca 231  Q
    |||| ||||||| ||||| ||||||||||||||||||||||||||| |||||    
T  17656787 gtggccgggattcgaacctgaaccttacatatattatgcattgtccatacca 17656838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 21649346 - 21649300
Alignment:
Q  180 gtggtcgggatttgaa-cccgaaccttacatatattatgcattgtcc 225  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||    
T  21649346 gtggtcgggatttgaagcccgatccttacatatattatgcattgtcc 21649300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 48159745 - 48159699
Alignment:
Q  180 gtggtcgggatttgaacc-cgaaccttacatatattatgcattgtcc 225  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||    
T  48159745 gtggtcgggatttgaacttcgaaccttacatatattatgcattgtcc 48159699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 21318246 - 21318298
Alignment:
Q  180 gtggtcgggatttgaacccga-accttacatatattatgcattgtccctacca 231  Q
    ||||||||| ||||||||| | ||||| |||||||||||||||||||||||||    
T  21318246 gtggtcggggtttgaaccctagaccttgcatatattatgcattgtccctacca 21318298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 22164262 - 22164314
Alignment:
Q  180 gtggtcgggatttgaacccga-accttacatatattatgcattgtccctacca 231  Q
    ||||||||| ||||||||| | ||||||||||||||||||||||| |||||||    
T  22164262 gtggtcggggtttgaaccccagaccttacatatattatgcattgttcctacca 22164314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 231
Target Start/End: Complemental strand, 22411815 - 22411780
Alignment:
Q  196 cccgaaccttacatatattatgcattgtccctacca 231  Q
    |||||||||||||||||||||||||||||| |||||    
T  22411815 cccgaaccttacatatattatgcattgtccatacca 22411780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 231
Target Start/End: Complemental strand, 36071195 - 36071160
Alignment:
Q  196 cccgaaccttacatatattatgcattgtccctacca 231  Q
    |||||||||||||||||||||||||||||| |||||    
T  36071195 cccgaaccttacatatattatgcattgtccttacca 36071160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 231
Target Start/End: Complemental strand, 23160086 - 23160056
Alignment:
Q  201 accttacatatattatgcattgtccctacca 231  Q
    |||||||||||||||||||||||||||||||    
T  23160086 accttacatatattatgcattgtccctacca 23160056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 36479057 - 36479007
Alignment:
Q  182 ggtcgggatttgaacc-cgaaccttacatatattatgcattgtccctacca 231  Q
    ||||||| || ||||| |||||||||||||||||||||||||||| |||||    
T  36479057 ggtcggggttcgaacctcgaaccttacatatattatgcattgtccatacca 36479007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 2587704 - 2587745
Alignment:
Q  190 tttgaacccgaaccttacatatattatgcattgtccctacca 231  Q
    |||||||||| ||||||||||||||||||||| ||| |||||    
T  2587704 tttgaacccggaccttacatatattatgcattatccatacca 2587745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 6586198 - 6586157
Alignment:
Q  190 tttgaacccgaaccttacatatattatgcattgtccctacca 231  Q
    |||||||||||||||| |||||| |||||||||| |||||||    
T  6586198 tttgaacccgaaccttccatatactatgcattgttcctacca 6586157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 29228787 - 29228746
Alignment:
Q  190 tttgaacccgaaccttacatatattatgcattgtccctacca 231  Q
    ||||||||| ||| |||||||||||||| |||||||||||||    
T  29228787 tttgaacccaaactttacatatattatggattgtccctacca 29228746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 37462178 - 37462133
Alignment:
Q  180 gtggtcgggatttgaacccgaaccttacatatattatgcattgtcc 225  Q
    ||||||||| || ||| ||| |||||||||||||||||||||||||    
T  37462178 gtggtcggggttggaatccggaccttacatatattatgcattgtcc 37462133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 50650925 - 50650966
Alignment:
Q  185 cgggatttgaaccc-gaaccttacatatattatgcattgtcc 225  Q
    ||||||| |||||| |||||||||||||||||||||||||||    
T  50650925 cgggattcgaaccctgaaccttacatatattatgcattgtcc 50650966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 9028065 - 9028117
Alignment:
Q  180 gtggtcgggatttgaacccga-accttacatatattatgcattgtccctacca 231  Q
    ||||| |||||| |||||| | ||||||||||| |||||||||||||||||||    
T  9028065 gtggttgggattcgaaccccagaccttacatattttatgcattgtccctacca 9028117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 11949756 - 11949808
Alignment:
Q  180 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtccctacca 231  Q
    ||||||||| ||||||||| | ||||| ||||||||||||||||||| |||||    
T  11949756 gtggtcggggtttgaaccccggaccttgcatatattatgcattgtccatacca 11949808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 231
Target Start/End: Original strand, 14197448 - 14197476
Alignment:
Q  203 cttacatatattatgcattgtccctacca 231  Q
    |||||||||||||||||||||||||||||    
T  14197448 cttacatatattatgcattgtccctacca 14197476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 223
Target Start/End: Original strand, 17948129 - 17948173
Alignment:
Q  180 gtggtcgggatttgaac-ccgaaccttacatatattatgcattgt 223  Q
    ||||||||| ||||||| ||||||||||||||| |||||||||||    
T  17948129 gtggtcggggtttgaactccgaaccttacatattttatgcattgt 17948173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 25999445 - 25999413
Alignment:
Q  199 gaaccttacatatattatgcattgtccctacca 231  Q
    |||||||| ||||||||||||||||||||||||    
T  25999445 gaaccttatatatattatgcattgtccctacca 25999413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 223
Target Start/End: Original strand, 37005516 - 37005556
Alignment:
Q  184 tcgggatttgaaccc-gaaccttacatatattatgcattgt 223  Q
    |||||||| |||||| |||||||||||||||||||||||||    
T  37005516 tcgggattcgaaccctgaaccttacatatattatgcattgt 37005556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 223
Target Start/End: Original strand, 50380829 - 50380873
Alignment:
Q  180 gtggtcgggatttgaac-ccgaaccttacatatattatgcattgt 223  Q
    ||||||| ||||||||| ||| |||||||||||||||||||||||    
T  50380829 gtggtcgagatttgaactccggaccttacatatattatgcattgt 50380873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 225
Target Start/End: Complemental strand, 56096262 - 56096226
Alignment:
Q  190 tttgaacc-cgaaccttacatatattatgcattgtcc 225  Q
    |||||||| ||||||||||||||||||||||||||||    
T  56096262 tttgaaccacgaaccttacatatattatgcattgtcc 56096226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1063 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Original strand, 1075 - 1103
Alignment:
Q  201 accttacatatattatgcattgtccctac 229  Q
    |||||||||||||||||||||||||||||    
T  1075 accttacatatattatgcattgtccctac 1103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 161209 - 161157
Alignment:
Q  180 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtccctacca 231  Q
    ||||||||| ||||||||| ||||||| ||||| ||||||||||||| |||||    
T  161209 gtggtcggggtttgaaccccgaaccttgcatattttatgcattgtccatacca 161157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 189982 - 190010
Alignment:
Q  196 cccgaaccttacatatattatgcattgtc 224  Q
    |||||||||||||||||||||||||||||    
T  189982 cccgaaccttacatatattatgcattgtc 190010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University