View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16172_low_36 (Length: 227)
Name: NF16172_low_36
Description: NF16172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16172_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 27800491 - 27800589
Alignment:
| Q |
18 |
aagaagttataattacaagggattctattgttggatagtttgtgtatattgaaatggctatgcattgcaattgtaaccattcaactaatcaattagttgc |
117 |
Q |
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| T |
27800491 |
aagaagttataattacaagggattctattgtttgatagtttgtgtatattgcaatggctatgcattgcaattgt-actattcaactaatcaattagttgc |
27800589 |
T |
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Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 27800590 - 27800640
Alignment:
| Q |
160 |
caaagacaagttcattatgcgttgcctatatggctcaatgacactttaagt |
210 |
Q |
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| T |
27800590 |
caaagacaagttcattatgcgttgcctatatggctcaatgacactttaagt |
27800640 |
T |
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