View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16172_low_4 (Length: 642)

Name: NF16172_low_4
Description: NF16172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16172_low_4
NF16172_low_4
[»] chr3 (8 HSPs)
chr3 (22-626)||(5372391-5372995)
chr3 (118-314)||(5357757-5357952)
chr3 (454-502)||(31314120-31314168)
chr3 (451-502)||(29196952-29197003)
chr3 (453-502)||(44701012-44701062)
chr3 (552-601)||(9666890-9666938)
chr3 (453-502)||(9666988-9667037)
chr3 (552-600)||(28074098-28074145)
[»] chr1 (7 HSPs)
chr1 (453-578)||(8871540-8871666)
chr1 (438-502)||(776832-776896)
chr1 (438-502)||(50167688-50167752)
chr1 (451-502)||(28266108-28266159)
chr1 (453-502)||(45644849-45644898)
chr1 (552-581)||(50167608-50167637)
chr1 (552-600)||(28266011-28266058)
[»] chr6 (2 HSPs)
chr6 (452-584)||(4045012-4045144)
chr6 (453-502)||(3039456-3039505)
[»] chr7 (4 HSPs)
chr7 (450-502)||(12098319-12098371)
chr7 (453-502)||(41317985-41318034)
chr7 (455-502)||(24526439-24526486)
chr7 (552-600)||(41317870-41317917)
[»] chr4 (5 HSPs)
chr4 (451-502)||(52467854-52467905)
chr4 (448-502)||(45687716-45687770)
chr4 (452-502)||(46147860-46147910)
chr4 (452-502)||(36463922-36463972)
chr4 (551-601)||(46147778-46147827)
[»] chr2 (4 HSPs)
chr2 (452-505)||(36773146-36773200)
chr2 (452-505)||(33162946-33162999)
chr2 (552-601)||(33162851-33162899)
chr2 (553-581)||(26352253-26352281)
[»] chr8 (4 HSPs)
chr8 (453-502)||(5688849-5688898)
chr8 (453-498)||(30291216-30291261)
chr8 (455-502)||(18141421-18141468)
chr8 (455-505)||(40320686-40320736)


Alignment Details
Target: chr3 (Bit Score: 589; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 22 - 626
Target Start/End: Original strand, 5372391 - 5372995
Alignment:
Q  22 ccaaagggattagtctcccttcaattgaatcaactccaagcagtggaaaacttcctacttggaagaacctttattaaattattatcatgccaacaaatag 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5372391 ccaaagggattagtctcccttcaattgaatcaactccaagcagtggaaaacttcctacttggaagaacctttattaaattattatcatgccaacaaatag 5372490  T
Q  122 catacataagagatgctaaaacacttgtatatggaataccttccatatatcatcatagttcttcatttttcttggattcttcttccaaaacctcaccagc 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5372491 catacataagagatgctaaaacacttgtatatggaataccttccatatattatcatagttcttcatttttcttggattcttcttccaaaacctcaccagc 5372590  T
Q  222 aattacaagagaatgtgcatatatacttagactacaaatgtgtgaatcttatcttaagcattcataaagtcaaaggatataaaactttgcacatatagtc 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5372591 aattacaagagaatgtgcatatatacttagactacaaatgtgtgaatcttatcttaagcattcataaagtcaaaggatagaaaactttgcacatatagtc 5372690  T
Q  322 aaaggctctaaccaaataaatcaaaactttgtccacccttgtacacctgatcaataaagtaatgtttacaaattacaagttcaagaaactaatacttgca 421  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5372691 aaaggctctaaccaaataaatcaaaactttgtccaaccttgtacacctgatcaataaagtaatgtttacaaattacaagttcaagaaactaatacttgca 5372790  T
Q  422 agtcgaaaaagaatccgtcaaggtggaaaattgttgaaatgtgtctcaaaattgatgttgaaatctgaaaaaatcgtggcatgtgggcatggaagagtgg 521  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5372791 agtcgaaaaagaatccgtcaaggtggaaaattgttgaaatgtgtctcaaaattgatgttgaaatctgaaaaaatcgtggcatgtgggcatggaagagtgg 5372890  T
Q  522 cacgattttaggtgtgcttaaggaaggtttcactggaaaaatcgtggcacgatgcaggagcaaacatggcacgatgcagataattagatcaggcattgta 621  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5372891 cacgattttaggtgtgcttaagggaggtttcactggaaaaatcgtggcacgatgcaggagcaaacatggcacgatgcagataattagatcaggcattgta 5372990  T
Q  622 ctatt 626  Q
    |||||    
T  5372991 ctatt 5372995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 118 - 314
Target Start/End: Original strand, 5357757 - 5357952
Alignment:
Q  118 atagcatacataagagatgctaaaacacttgtatatggaataccttccatatatcatcatagttcttcatttttcttggattcttcttccaaaacctcac 217  Q
    |||||| |||||||||||||||||||||||||||||| ||| |||||||||||  || ||| ||||||| ||||||||||  ||||||||||||||||||    
T  5357757 atagcacacataagagatgctaaaacacttgtatatgcaatgccttccatata--at-ataattcttcaattttcttggaggcttcttccaaaacctcac 5357853  T
Q  218 cagcaattacaagagaatgtgcatatatacttagactacaaatgtgtgaatct--tatcttaagcattcataaagtcaaaggatataaaactttgcaca 314  Q
     ||||| ||||||||||||||||||||| ||||||||||||||||||||||||  ||||| |||||||||||||||| |||| ||  ||||||| ||||    
T  5357854 tagcaactacaagagaatgtgcatatattcttagactacaaatgtgtgaatctcatatctcaagcattcataaagtcgaagggtaataaactttacaca 5357952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 454 - 502
Target Start/End: Original strand, 31314120 - 31314168
Alignment:
Q  454 gttgaaatgtgtctcaaaattgatgttgaaatctgaaaaaatcgtggca 502  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||    
T  31314120 gttgaaatgtgtctcaaaattgatgttgaagtttgaaaaaatcgtggca 31314168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 451 - 502
Target Start/End: Complemental strand, 29197003 - 29196952
Alignment:
Q  451 attgttgaaatgtgtctcaaaattgatgttgaaatctgaaaaaatcgtggca 502  Q
    ||||||||||||||||||||||||||||||||| | ||  ||||||||||||    
T  29197003 attgttgaaatgtgtctcaaaattgatgttgaagtttgggaaaatcgtggca 29196952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 453 - 502
Target Start/End: Complemental strand, 44701062 - 44701012
Alignment:
Q  453 tgttgaaatgtgtctcaaaattgatgttgaaatct-gaaaaaatcgtggca 502  Q
    ||||||||||||||||||||||||| ||||| ||| ||||||| |||||||    
T  44701062 tgttgaaatgtgtctcaaaattgattttgaagtctggaaaaaaccgtggca 44701012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 552 - 601
Target Start/End: Complemental strand, 9666938 - 9666890
Alignment:
Q  552 cactggaaaaatcgtggcacgatgcaggagcaaacatggcacgatgcaga 601  Q
    ||||||||||||||||||||||| ||||||  ||| ||||||||||||||    
T  9666938 cactggaaaaatcgtggcacgatccaggag-gaacgtggcacgatgcaga 9666890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 502
Target Start/End: Complemental strand, 9667037 - 9666988
Alignment:
Q  453 tgttgaaatgtgtctcaaaattgatgttgaaatctgaaaaaatcgtggca 502  Q
    |||||||||||||||||||||| |||||||| | || || ||||||||||    
T  9667037 tgttgaaatgtgtctcaaaattaatgttgaagtttggaacaatcgtggca 9666988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 552 - 600
Target Start/End: Original strand, 28074098 - 28074145
Alignment:
Q  552 cactggaaaaatcgtggcacgatgcaggagcaaacatggcacgatgcag 600  Q
    ||||||||||||||||||||||| ||||||  ||| |||||||||||||    
T  28074098 cactggaaaaatcgtggcacgatccaggag-gaacgtggcacgatgcag 28074145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 453 - 578
Target Start/End: Complemental strand, 8871666 - 8871540
Alignment:
Q  453 tgttgaaatgtgtctcaaaattgatgttgaaatctgaaaaaatcgtggcatgtgggcatggaagagtggcacgattttaggtgtgcttaaggaagg-ttt 551  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||||||| ||  ||| || |  ||| ||||||||| |||||| ||| || ||| | |    
T  8871666 tgttgaaatgtgtctcaaaattgatgttgaagtctggaaaaatcgtggcacgtttgcagggcaacgtgacacgattttgggtgtgtttatggtaggctgt 8871567  T
Q  552 cactggaaaaatcgtggcacgatgcag 578  Q
    |||||||||||||||||||||||||||    
T  8871566 cactggaaaaatcgtggcacgatgcag 8871540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 438 - 502
Target Start/End: Original strand, 776832 - 776896
Alignment:
Q  438 gtcaaggtggaaaattgttgaaatgtgtctcaaaattgatgttgaaatctgaaaaaatcgtggca 502  Q
    ||||||||||| || |||||||||||||||||||||||| |||||| | || |||||||||||||    
T  776832 gtcaaggtggagaaatgttgaaatgtgtctcaaaattgaagttgaagtttggaaaaatcgtggca 776896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 438 - 502
Target Start/End: Complemental strand, 50167752 - 50167688
Alignment:
Q  438 gtcaaggtggaaaattgttgaaatgtgtctcaaaattgatgttgaaatctgaaaaaatcgtggca 502  Q
    ||||||||||| || |||||||||||||||||||||| |||||||| | || |||||||||||||    
T  50167752 gtcaaggtggagaaatgttgaaatgtgtctcaaaattaatgttgaagtttggaaaaatcgtggca 50167688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 451 - 502
Target Start/End: Complemental strand, 28266159 - 28266108
Alignment:
Q  451 attgttgaaatgtgtctcaaaattgatgttgaaatctgaaaaaatcgtggca 502  Q
    ||||||||||||||||||||||||||||| ||| | |||||||||| |||||    
T  28266159 attgttgaaatgtgtctcaaaattgatgtggaagtttgaaaaaatcatggca 28266108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 453 - 502
Target Start/End: Complemental strand, 45644898 - 45644849
Alignment:
Q  453 tgttgaaatgtgtctcaaaattgatgttgaaatctgaaaaaatcgtggca 502  Q
    |||||||||||||||||||||||| ||||||  ||| |||||||||||||    
T  45644898 tgttgaaatgtgtctcaaaattgaagttgaagcctggaaaaatcgtggca 45644849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 552 - 581
Target Start/End: Complemental strand, 50167637 - 50167608
Alignment:
Q  552 cactggaaaaatcgtggcacgatgcaggag 581  Q
    ||||||||||||||||||||||||||||||    
T  50167637 cactggaaaaatcgtggcacgatgcaggag 50167608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 552 - 600
Target Start/End: Complemental strand, 28266058 - 28266011
Alignment:
Q  552 cactggaaaaatcgtggcacgatgcaggagcaaacatggcacgatgcag 600  Q
    ||||||||||||||||||||||| || |||  |||||||||||||||||    
T  28266058 cactggaaaaatcgtggcacgatccaagag-gaacatggcacgatgcag 28266011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 452 - 584
Target Start/End: Original strand, 4045012 - 4045144
Alignment:
Q  452 ttgttgaaatgtgtctcaaaattgatgttgaaatctgaaaaaatcgtggcatgtgggcatggaagagtggcacgattttaggtgtgctt-aaggaaggtt 550  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||| ||| |||||| |   || ||||||||   ||||| ||  |||| | |     
T  4045012 ttgttgaaatgtgtctcaaaattgatgttgaagtctgaagaaatcgtggcacgtgagcatgg-atcctgacacgatttcgagtgtgtttctaggaggctg 4045110  T
Q  551 tcactggaaaaatcgtggcacgatgcaggagcaa 584  Q
    ||||||||||||| ||||||||||||||||||||    
T  4045111 tcactggaaaaattgtggcacgatgcaggagcaa 4045144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 502
Target Start/End: Complemental strand, 3039505 - 3039456
Alignment:
Q  453 tgttgaaatgtgtctcaaaattgatgttgaaatctgaaaaaatcgtggca 502  Q
    |||||||||||||||||||||| |||||||| | ||  ||||||||||||    
T  3039505 tgttgaaatgtgtctcaaaatttatgttgaagtttgggaaaatcgtggca 3039456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 450 - 502
Target Start/End: Complemental strand, 12098371 - 12098319
Alignment:
Q  450 aattgttgaaatgtgtctcaaaattgatgttgaaatctgaaaaaatcgtggca 502  Q
    |||||||||||||||||||||||||||||||||| | || |||||||||||||    
T  12098371 aattgttgaaatgtgtctcaaaattgatgttgaagtttggaaaaatcgtggca 12098319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 453 - 502
Target Start/End: Complemental strand, 41318034 - 41317985
Alignment:
Q  453 tgttgaaatgtgtctcaaaattgatgttgaaatctgaaaaaatcgtggca 502  Q
    |||||||||||||||||||||||| |||||| | || |||||||||||||    
T  41318034 tgttgaaatgtgtctcaaaattgaagttgaagtttggaaaaatcgtggca 41317985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 455 - 502
Target Start/End: Complemental strand, 24526486 - 24526439
Alignment:
Q  455 ttgaaatgtgtctcaaaattgatgttgaaatctgaaaaaatcgtggca 502  Q
    |||||||||||||||||||||| |||||| | || |||||||||||||    
T  24526486 ttgaaatgtgtctcaaaattgaagttgaagtttggaaaaatcgtggca 24526439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 552 - 600
Target Start/End: Complemental strand, 41317917 - 41317870
Alignment:
Q  552 cactggaaaaatcgtggcacgatgcaggagcaaacatggcacgatgcag 600  Q
    |||| ||||||||||||||||||||||||| | || |||||||||||||    
T  41317917 cactcgaaaaatcgtggcacgatgcaggag-atacgtggcacgatgcag 41317870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 451 - 502
Target Start/End: Complemental strand, 52467905 - 52467854
Alignment:
Q  451 attgttgaaatgtgtctcaaaattgatgttgaaatctgaaaaaatcgtggca 502  Q
    ||||||||||||||||||||||||||||||||| ||| ||| ||||||||||    
T  52467905 attgttgaaatgtgtctcaaaattgatgttgaagtctaaaacaatcgtggca 52467854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 448 - 502
Target Start/End: Complemental strand, 45687770 - 45687716
Alignment:
Q  448 aaaattgttgaaatgtgtctcaaaattgatgttgaaatctgaaaaaatcgtggca 502  Q
    |||| ||||||||||||||||||||||||||||||| | || |||||||||||||    
T  45687770 aaaactgttgaaatgtgtctcaaaattgatgttgaagtttggaaaaatcgtggca 45687716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 452 - 502
Target Start/End: Complemental strand, 46147910 - 46147860
Alignment:
Q  452 ttgttgaaatgtgtctcaaaattgatgttgaaatctgaaaaaatcgtggca 502  Q
    |||||||||||||||||||||||||||||||| | || ||||||| |||||    
T  46147910 ttgttgaaatgtgtctcaaaattgatgttgaagtttggaaaaatcatggca 46147860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 452 - 502
Target Start/End: Complemental strand, 36463972 - 36463922
Alignment:
Q  452 ttgttgaaatgtgtctcaaaattgatgttgaaatctgaaaaaatcgtggca 502  Q
    |||||||||||||||||||||||||| ||||| | || || ||||||||||    
T  36463972 ttgttgaaatgtgtctcaaaattgatattgaagtttggaacaatcgtggca 36463922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 551 - 601
Target Start/End: Complemental strand, 46147827 - 46147778
Alignment:
Q  551 tcactggaaaaatcgtggcacgatgcaggagcaaacatggcacgatgcaga 601  Q
    |||||||||||||||||||||||| ||||||  ||| ||||||||||||||    
T  46147827 tcactggaaaaatcgtggcacgatccaggag-gaacgtggcacgatgcaga 46147778  T

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Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 452 - 505
Target Start/End: Original strand, 36773146 - 36773200
Alignment:
Q  452 ttgttgaaatgtgtctcaaaattgatg-ttgaaatctgaaaaaatcgtggcatgt 505  Q
    ||||||||||||||||||||||||||| ||||| | |||||||||||||||||||    
T  36773146 ttgttgaaatgtgtctcaaaattgatgtttgaagtttgaaaaaatcgtggcatgt 36773200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 452 - 505
Target Start/End: Complemental strand, 33162999 - 33162946
Alignment:
Q  452 ttgttgaaatgtgtctcaaaattgatgttgaaatctgaaaaaatcgtggcatgt 505  Q
    ||||||||||||||||||||||||||| |||| | || ||||||||||||||||    
T  33162999 ttgttgaaatgtgtctcaaaattgatgatgaagtttggaaaaatcgtggcatgt 33162946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 552 - 601
Target Start/End: Complemental strand, 33162899 - 33162851
Alignment:
Q  552 cactggaaaaatcgtggcacgatgcaggagcaaacatggcacgatgcaga 601  Q
    ||||||||||||||||||||||| ||||||  ||||||||||||||||||    
T  33162899 cactggaaaaatcgtggcacgatccaggag-gaacatggcacgatgcaga 33162851  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 553 - 581
Target Start/End: Original strand, 26352253 - 26352281
Alignment:
Q  553 actggaaaaatcgtggcacgatgcaggag 581  Q
    |||||||||||||||||||||||||||||    
T  26352253 actggaaaaatcgtggcacgatgcaggag 26352281  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 453 - 502
Target Start/End: Original strand, 5688849 - 5688898
Alignment:
Q  453 tgttgaaatgtgtctcaaaattgatgttgaaatctgaaaaaatcgtggca 502  Q
    ||||||||||||||||||||||||||||||| | || |||||||||||||    
T  5688849 tgttgaaatgtgtctcaaaattgatgttgaagtttggaaaaatcgtggca 5688898  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 453 - 498
Target Start/End: Original strand, 30291216 - 30291261
Alignment:
Q  453 tgttgaaatgtgtctcaaaattgatgttgaaatctgaaaaaatcgt 498  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||    
T  30291216 tgttgaaatgtgtctcaaaattgatgttgaagtctggaaaaatcgt 30291261  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 455 - 502
Target Start/End: Original strand, 18141421 - 18141468
Alignment:
Q  455 ttgaaatgtgtctcaaaattgatgttgaaatctgaaaaaatcgtggca 502  Q
    ||||||||||||||||||||||||||||| |||| || ||||||||||    
T  18141421 ttgaaatgtgtctcaaaattgatgttgaagtctggaacaatcgtggca 18141468  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 455 - 505
Target Start/End: Original strand, 40320686 - 40320736
Alignment:
Q  455 ttgaaatgtgtctcaaaattgatgttgaaatctgaaaaaatcgtggcatgt 505  Q
    ||||||||||||| |||||||| |||||| | || ||||||||||||||||    
T  40320686 ttgaaatgtgtcttaaaattgaagttgaagtttggaaaaatcgtggcatgt 40320736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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