View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16172_low_8 (Length: 469)
Name: NF16172_low_8
Description: NF16172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16172_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Original strand, 38867598 - 38868054
Alignment:
| Q |
1 |
aatgatatggtgaatgtctgtgtgaactgtgaagggtctatt-cagaagaatgaaactaaatagtaaatagtagttgaataaaatacatacagtttgaga |
99 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | | ||| |
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| T |
38867598 |
aatgatatggtgagtgtctgtgtgaactgtgaagggtctatttcagaagaatgaaactaaatagtaaatagtagttgaataaaatacatacaatatcaga |
38867697 |
T |
|
| Q |
100 |
agttcatgcttcaaaagaatgaaacagcnnnnnnnnnn--------catcaaataacactcattcaacccctttcaatctagaaatatggagtattattt |
191 |
Q |
| |
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||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38867698 |
agttcctgcttcaaaaaaatgaaacagccaaaaaaaaaaaaaaaaacatcaaataacactcattcaacccctttcaatctagaaatatggagtatcattt |
38867797 |
T |
|
| Q |
192 |
tacttttcagttttttaattacaattggcaaaaggaaagaatagcactattgagccactgtgaaaccaacctcatgcagatccctccccgttcagtgacc |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
38867798 |
tacttttcagttttttaattacaattggcaaaaggaaagaatagcactattgagccactgtgaaaccaacctcatgcggatccctcc--gttcagtgacc |
38867895 |
T |
|
| Q |
292 |
aggataaccatggcccaactcttctagtgacctcacctgagcctacagcccaacctgttaagactggtccgtgttccatcaccttgatgctcccacatgg |
391 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| |
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| T |
38867896 |
aggataaccatggccaaactcttctagtgacctcacctgagcctacagcccaacctgttaagacaggtccatgttccatcaccttaatgctcccacatgg |
38867995 |
T |
|
| Q |
392 |
gttacaagttggtgttaatcaatcagcaaacaattggctgtgttggaaggatataaacc |
450 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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|
| T |
38867996 |
gttacaagttggtgttaatcaatcagctaacaattggctgtgttggaaggacataaacc |
38868054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 333 - 450
Target Start/End: Complemental strand, 38750116 - 38749998
Alignment:
| Q |
333 |
cctacagcccaacctgttaagactggtccgtgttccatcaccttgatgctcccacatgggttacaagttggtgttaatcaa-tcagcaaacaattggctg |
431 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||| |
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|
| T |
38750116 |
cctacagcccaacctgttaagacacagccatgttccatcaccttgatgctcccacatgggttacaagttggtgttattcaactcagcaaacaaatggctg |
38750017 |
T |
|
| Q |
432 |
tgttggaaggatataaacc |
450 |
Q |
| |
|
|||||||||| |||||||| |
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|
| T |
38750016 |
tgttggaaggttataaacc |
38749998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 144 - 250
Target Start/End: Original strand, 38598698 - 38598804
Alignment:
| Q |
144 |
ataacactcattcaacccctttcaatctagaaatatggagtattattttacttttcagttttttaattacaattggcaaaaggaaagaatagcactattg |
243 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||| |||||||||||||| |||| |||||||||||| |
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|
| T |
38598698 |
ataacactcattcaacccctttcaatctaacaatatggagtattatttcacttttcagttctttaatgacaattggcaaaagaaaagtatagcactattg |
38598797 |
T |
|
| Q |
244 |
agccact |
250 |
Q |
| |
|
|| |||| |
|
|
| T |
38598798 |
agtcact |
38598804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 333 - 450
Target Start/End: Original strand, 38848986 - 38849104
Alignment:
| Q |
333 |
cctacagcccaacctgttaagactggtccgtgttccatcaccttgatgctcccacatgggttacaagttggtgttaatcaa-tcagcaaacaattggctg |
431 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||| |
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|
| T |
38848986 |
cctacagcccaacctgttaagacacagccatgttccatcaccttgatgctcccacatgggttacaagttggtgttaatcaactcagcaaacaaatccctg |
38849085 |
T |
|
| Q |
432 |
tgttggaaggatataaacc |
450 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
38849086 |
tgttggaagcttataaacc |
38849104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 333 - 450
Target Start/End: Complemental strand, 38807444 - 38807326
Alignment:
| Q |
333 |
cctacagcccaacctgttaagactggtccgtgttccatcaccttgatgctcccacatgggttacaagttggtgttaatcaa-tcagcaaacaattggctg |
431 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||| | ||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
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|
| T |
38807444 |
cctacagcccaacctgttaagacacagccatgttccatccctttgttgctcccacatgggtcacaagttggtgttaatcaactcagcaaacaattggctg |
38807345 |
T |
|
| Q |
432 |
tgttggaaggatataaacc |
450 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
38807344 |
tgttggaagcctataaacc |
38807326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 333 - 450
Target Start/End: Original strand, 39310718 - 39310836
Alignment:
| Q |
333 |
cctacagcccaacctgttaagactggtccgtgttccatcaccttgatgctcccacatgggttacaagttggtgttaatcaa-tcagcaaacaattggctg |
431 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||| |||||||||||| |
|
|
| T |
39310718 |
cctacagcccaacctgttaagacacaatcatgttccatcaccttgttgctcccacatgggttacaagttggtgtaaatcaactcagcgaacaattggctg |
39310817 |
T |
|
| Q |
432 |
tgttggaaggatataaacc |
450 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
39310818 |
tgttggaagtttataaacc |
39310836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 363 - 449
Target Start/End: Original strand, 38866004 - 38866091
Alignment:
| Q |
363 |
tgttccatcaccttgatgctcccacatgggttacaagttggtgttaatcaa-tcagcaaacaattggctgtgttggaaggatataaac |
449 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||| |
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|
| T |
38866004 |
tgttccatcaccttggtgctcccacatgggtcacaagttggtgttaatcaactcagcgaacaattggctgtgttggaagtttataaac |
38866091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 39953790 - 39953726
Alignment:
| Q |
147 |
acactcattcaacccctttcaatctagaaatatggagtattattttacttttcagttttttaatt |
211 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| |
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|
| T |
39953790 |
acactcattcaacccctttcaatctagcaatatggagtattatttcacttttcagttctttaatt |
39953726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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