View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16172_low_9 (Length: 456)
Name: NF16172_low_9
Description: NF16172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16172_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 21 - 446
Target Start/End: Original strand, 4149715 - 4150140
Alignment:
| Q |
21 |
gggtttcatcagattcgtgtctcaatttttgtatctacgtgataacaaaaccgcactgcacactctccatcttcaccgcgaaggtgtcatctggcctcgc |
120 |
Q |
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|||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| || |
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| T |
4149715 |
gggtttcaccatattcgtgtatcaatttttgtatctacgtgataacaaaaccgcactgcacactctcgatcttcaccgcgatggtgtcatctggcctggc |
4149814 |
T |
|
| Q |
121 |
cacctcaagtgggttataaaatatgcatttgaccacggtgtccagctattagatgtagattcgacctttaatcatcaacactatccacttccctgcgttt |
220 |
Q |
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||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||| |
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| T |
4149815 |
tacctcaactgggttataaaatacgcatttgaccacggtgtccagctattagatgtagattcgaccttttattatcaacactatccacttccctacgttt |
4149914 |
T |
|
| Q |
221 |
catgtgacactttaacatctcttaccctttgtagaaacgatcaattttgttatcattcaccattattcccaacttctctgaatttgcctgcattaaccag |
320 |
Q |
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||||| ||||||||||||||||||||||||||| |||| |||||||| || ||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4149915 |
catgtcacactttaacatctcttaccctttgtacaaacaatcaatttggtcatccttcatcattattcccaacttctctgaatttgcctgcattaaccag |
4150014 |
T |
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| Q |
321 |
cttgtgtctaaaatacttttcctttcatggtagtggtgatgataaccgtgctgagcccttttcgtcatttaacagcttgaaaagtttgatcattcactgt |
420 |
Q |
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| T |
4150015 |
cttgtgtctaaaatactttgcctttcatggtagtggtgatgatgaccgtgctgagcccttttcgtcatttaacagcttgaaaagtttgatcattcactgt |
4150114 |
T |
|
| Q |
421 |
tgtgttgaagaacaaaacctgttcat |
446 |
Q |
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| T |
4150115 |
tgtgttcaagaacaaaacctgttcat |
4150140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 21 - 446
Target Start/End: Original strand, 4165487 - 4165912
Alignment:
| Q |
21 |
gggtttcatcagattcgtgtctcaatttttgtatctacgtgataacaaaaccgcactgcacactctccatcttcaccgcgaaggtgtcatctggcctcgc |
120 |
Q |
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| T |
4165487 |
gggtttcaccatattcgtgtatcaatttttgtatctacgtgataacaaaaccgcactgcacactctcgatcttcaccgcgatggtgtcatctggcctggc |
4165586 |
T |
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| Q |
121 |
cacctcaagtgggttataaaatatgcatttgaccacggtgtccagctattagatgtagattcgacctttaatcatcaacactatccacttccctgcgttt |
220 |
Q |
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|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||| |
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| T |
4165587 |
tacctcatgtgggttataaaatacgcatttgaccacggtgtccagctattagatgtagattcgaccttttattatcaacactatccacttccctacgttt |
4165686 |
T |
|
| Q |
221 |
catgtgacactttaacatctcttaccctttgtagaaacgatcaattttgttatcattcaccattattcccaacttctctgaatttgcctgcattaaccag |
320 |
Q |
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| T |
4165687 |
tatgtcacactttaacatctcttaccctttgtacaaacaatcaatttggtcatccttcatcattattcccaacttctctgaatttgcctgcattaaccag |
4165786 |
T |
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| Q |
321 |
cttgtgtctaaaatacttttcctttcatggtagtggtgatgataaccgtgctgagcccttttcgtcatttaacagcttgaaaagtttgatcattcactgt |
420 |
Q |
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| T |
4165787 |
catgtgtctaaaatactttgcctttcatggtagtggtgatgatgaccgtgctgagcccttttcgtcatttaacagcttgaaaagtttgatcattcactgt |
4165886 |
T |
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| Q |
421 |
tgtgttgaagaacaaaacctgttcat |
446 |
Q |
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|||||||||||||||||||||||||| |
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| T |
4165887 |
tgtgttgaagaacaaaacctgttcat |
4165912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 361
Target Start/End: Complemental strand, 43863747 - 43863685
Alignment:
| Q |
299 |
tgaatttgcctgcattaaccagcttgtgtctaaaatacttttcctttcatggtagtggtgatg |
361 |
Q |
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| T |
43863747 |
tgaatttgccagcattaaccaccttgtctttaaagtacttttcctttcatcgcagtgatgatg |
43863685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 52187235 - 52187280
Alignment:
| Q |
294 |
ttctctgaatttgcctgcattaaccagcttgtgtctaaaatacttt |
339 |
Q |
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| T |
52187235 |
ttctctgaatttgccagcattaaccaacttgtctctaaagtacttt |
52187280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 414
Target Start/End: Complemental strand, 7976438 - 7976378
Alignment:
| Q |
354 |
tggtgatgataaccgtgctgagcccttttcgtcatttaacagcttgaaaagtttgatcatt |
414 |
Q |
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| T |
7976438 |
tggtgataatgatcgtgctgagcctttttcgacatttaacaagttgaatagtttgatcatt |
7976378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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