View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16173_low_1 (Length: 423)
Name: NF16173_low_1
Description: NF16173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16173_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 16 - 405
Target Start/End: Complemental strand, 39504589 - 39504200
Alignment:
| Q |
16 |
atcttcactgtcctccaccataccatagtcaacgccgccgccctcgttcctggcgcctccgtctttccctccgccaccttcgattctgtcaacaacaaac |
115 |
Q |
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| T |
39504589 |
atcttcaccgtcctccaccataccatagtcaacgccgccgccctcgttcctggcgtctccgtcttcccctccgccaccttcgattctttcaacaacaacc |
39504490 |
T |
|
| Q |
116 |
ccctcgccgtcgtggaagattccaattgcgaaattgtggagctcgacgccatggaattgctagctgaacatctccacttttgcgagatatgcggcaaagg |
215 |
Q |
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||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39504489 |
ccctcgccgccgtggaagattccgattgcgaaattgtggagctcgacgccatggaattgctagctgaacatctccacttttgcgagatatgcggcaaagg |
39504390 |
T |
|
| Q |
216 |
cttcaagcgcgacgcgaatctccggatgcacatgagagctcacgggaatcaattcaagacgccggaagctttagcgaagcctttaaacatgctccgtcgt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39504389 |
cttcaagcgcgacgcgaatctccggatgcacatgagagctcacgggaatcaattcaagacgccggaagctttagcgaagcctttaaacatggtccgtcgt |
39504290 |
T |
|
| Q |
316 |
ccaacgcaattctcgtgtccgtttgaaggatgtaacagaaacaaaaaacataagaaattcaaagcattgaaatcggtgatttgtgtgaag |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
39504289 |
ccaacgcaattctcgtgtccgtttgaaggatgtaacagaaacaaaaagcataagaaattcaaagcattgaaatcggtgatttgtgtgaag |
39504200 |
T |
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