View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16173_low_3 (Length: 285)
Name: NF16173_low_3
Description: NF16173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16173_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 9 - 254
Target Start/End: Complemental strand, 14458361 - 14458122
Alignment:
| Q |
9 |
gaagaatattcgaggaaactcgtgaagggtgttgattattttgattctatcaaagaactcctcgatgaagttgctgcataccctctactaatcaaagatc |
108 |
Q |
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| T |
14458361 |
gaagaatattcgaggaaactcgtgaagggtgttgattattttgattctatcaaagaactcctcgatgaagttgctgcataccctctactaatcaaagatc |
14458262 |
T |
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| Q |
109 |
ctgcttcgaaaaatgattctgatagaaaagactctaaagggaagcagataaatgaatccgattacgttgctgtaaggtacttggataaggggagcgggag |
208 |
Q |
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| T |
14458261 |
ctgcttcgaaaaatgattctgatagaaaagactctaaagggaagcagataaaggaatccgattacgttgctgtaaggtacttggataaggg------gag |
14458168 |
T |
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| Q |
209 |
cactagtggagcatctgtcaactttgaaaaaactccttcagtagaa |
254 |
Q |
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| T |
14458167 |
cactagtggagcatctgccaactttgaaaaaactccttcagtagaa |
14458122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 9 - 269
Target Start/End: Complemental strand, 14467246 - 14466992
Alignment:
| Q |
9 |
gaagaatattcgaggaaactcgtgaagggtgttgattattttgattctatcaaagaactcctcgatgaagttgctgcataccctctactaatcaaagatc |
108 |
Q |
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||||| ||||||||||| || |||||||||||||||||||| ||||||||||||| ||||||||||||||||||| || ||||||||||| ||||||| |
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| T |
14467246 |
gaagagtattcgaggaatctagtgaagggtgttgattatttccattctatcaaagatatcctcgatgaagttgctgcttatcctctactaataaaagatc |
14467147 |
T |
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| Q |
109 |
ctgcttcgaaaaatgattctgatagaaaagactctaaagggaagcagataaatgaatccgattacgttgctgtaaggtacttggataaggggagcgggag |
208 |
Q |
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| T |
14467146 |
ctgcttcgaaaaatgattctgatagaaaagactctaaagcgaagcagataaaggaattcgattacgttgctgtaaggtacttggataaggg------gag |
14467053 |
T |
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| Q |
209 |
cactagtggagcatctgtcaactttgaaaaaactccttcagtagaagtgtctccaaaagaa |
269 |
Q |
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| T |
14467052 |
cactagtggagcatctgtcaactttgaaaaaactccttcagtagaagtgtctccaaaagaa |
14466992 |
T |
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