View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16174_high_1 (Length: 660)
Name: NF16174_high_1
Description: NF16174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16174_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 594; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 1 - 654
Target Start/End: Original strand, 41715211 - 41715864
Alignment:
| Q |
1 |
ctaacatttgtaatagaattatatgaagttagcatgaatgtggcatgtggaacttctctatcagagaatagttcttttccccttttatcttcattgataa |
100 |
Q |
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| T |
41715211 |
ctaacatttgtaatagaattatatgaagttagcatgagtgtggtatgtggaacttctctatcagagaatagttcttttccccttttctcttcattgataa |
41715310 |
T |
|
| Q |
101 |
ttacacatttaggtttgtatttgagttatcatcattagtttaatgacaatgtgaaatgtggttgaaaaacaaacacttgttataagcaattagttcaatg |
200 |
Q |
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| T |
41715311 |
ttacacatttaggtttgtatttgagttatcatcattagtttaatgacaatgtgaaatgtggttgaaaaacaaacacttgttataagcaattagttcaatg |
41715410 |
T |
|
| Q |
201 |
ttgtgaactaacgccacagtggagccctaaaatcttaatccaataataacttaaatattccaaccacattatgccattcaatttcactatgccaatagga |
300 |
Q |
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| T |
41715411 |
ttgtgaactaacgccacagtggagccctaaaatcttaatccaatagtaacttaaatattccaaccacattatgccattcaattttactatgccaatagga |
41715510 |
T |
|
| Q |
301 |
ttgtcttaaattaaaaatacatattcttctattaggtacttcataactttactatttccgtagaaaccttaaatattgaaatgtcaagtaccttaaatat |
400 |
Q |
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| T |
41715511 |
ttgtcttaaattaaaaatacatattcttctattaggtacttcataactttactatttccgtagaaaccttaaatattgaaatgtcaagtaccttaaatat |
41715610 |
T |
|
| Q |
401 |
tatttcttcatgtgcaaaaccattgcctatgtaattcagctttttagttaaattgtaaatggtccttatgcattatgtagagcaaagtagcccaaacaat |
500 |
Q |
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| T |
41715611 |
tatttcttcatgtgcaaaaccattgcctatgtaattcagctttttagttaaattgtaaatggtccttatgcattatgtagagcaaagtagcccaaacaat |
41715710 |
T |
|
| Q |
501 |
tgatatcagtagaggaaccaaaatagccctcagctaaatacaagattcaactcttatcagggtgtatacaccgccaagagtcatctgcagttagatcgnn |
600 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41715711 |
tgatatcagtagaggaaccaaaatagccctcagctaaatacaagattcaactcttatcagggtgtatacaccgccaagagtcatctgcagttagatcatt |
41715810 |
T |
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| Q |
601 |
nnnnnnactcagtcgcgagtacaattccacgttctgtattgtttagtttcatgt |
654 |
Q |
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||||||| |||||||||||||||||||||||||| ||||| ||||||| |
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| T |
41715811 |
ttttttactcagttgcgagtacaattccacgttctgtattatttaggttcatgt |
41715864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 509 - 595
Target Start/End: Original strand, 41705861 - 41705947
Alignment:
| Q |
509 |
gtagaggaaccaaaatagccctcagctaaatacaagattcaactcttatcagggtgtatacaccgccaagagtcatctgcagttaga |
595 |
Q |
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||||||||||||||||||||||| | ||||||||||||||||||| ||||| ||||||| | || |||||||||||||| ||||| |
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| T |
41705861 |
gtagaggaaccaaaatagccctcggtaaaatacaagattcaactctattcaggatgtatacgctgcgaagagtcatctgcaattaga |
41705947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 33 - 128
Target Start/End: Original strand, 23381527 - 23381623
Alignment:
| Q |
33 |
catgaatgtggcatgtggaacttctctatcagagaatagt--tcttttccccttttatcttcattgataattacacatttaggtttgtatttgagtta |
128 |
Q |
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| T |
23381527 |
catgattgtggtatgtagaacttctctcccagagagttgtattattttcccatttt-tcttcattgagaattacacattcaagtttgtatttgagtta |
23381623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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