View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16174_high_6 (Length: 281)
Name: NF16174_high_6
Description: NF16174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16174_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 31996225 - 31995963
Alignment:
| Q |
1 |
accattgtgttgaataattggcctctttccatgtattgaagacctttagatgcgcaatgtggtcaccgacatctccagtgtgaaagttcattcttgcatt |
100 |
Q |
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||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31996225 |
accattgcgttgaataattggcctctttccatgaattgaagacctttagatgcgcaatgtggtcaccgacatctccagtgtgaaagttcattcttgcatt |
31996126 |
T |
|
| Q |
101 |
gtctgcatgtacttgtttatctctcggacggtagaaaattgagtttccaacggaaagcatagcagcaatggagattatctcgtcagagcacttgtatttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31996125 |
gtctgcatgtacttgtttatctctcggacggtagaaaattgagtttccaacggaaagcatagcagcaatggagattatctcgtcagagcacttgtatttt |
31996026 |
T |
|
| Q |
201 |
tctgaagcaactatcatttttgacagcataggatcaagtgggaactctgccatccgtttacct |
263 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31996025 |
tctgaagcaactatcatttttgacaacataggatcaagtgggaactctgccatccgtttacct |
31995963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 15842681 - 15842425
Alignment:
| Q |
1 |
accattgtgttgaataattggcctctttccatgtattgaagacctttagatgcgcaatgtggtcaccgacatctccagtgtgaaagttcattcttgcatt |
100 |
Q |
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||||| |||||||||||||||||| |||||||||| || ||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
15842681 |
accatcgtgttgaataattggcctgtttccatgtactgtagacctttagatgagcaatgtggtcaccaacatctccagtgtgaaaattcattcttgcatt |
15842582 |
T |
|
| Q |
101 |
gtctgcatgtacttgtttatctctcggacggtagaaaattgagtttccaacggaaagcatagcagcaatggagattatctcgtcagagcacttgtatttt |
200 |
Q |
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| T |
15842581 |
gtctgcatgtacttgtttatccttcggacggtagaatattgagtttccaacagagagcatagaagcaatggagattatctcgtcagaacacttgtatttt |
15842482 |
T |
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| Q |
201 |
tctgaagcaactatcatttttgacagcataggatcaagtgggaactctgccatccgt |
257 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
15842481 |
tctgaagcaactatcatttttgacaacataggatcaagtggaaactctgccatccgt |
15842425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 24010678 - 24010426
Alignment:
| Q |
1 |
accattgtgttgaataattggcctctttccatgtattgaagacctttagatgcgcaatgtggtcaccgacatctccagtgtgaaagttcattcttgcatt |
100 |
Q |
| |
|
|||||||| |||||||||||| ||| ||||||| |||| |||| |||||||| |||||||||||||| |||| |||||||||||| |||||||||||||| |
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| T |
24010678 |
accattgtcttgaataattggactccttccatgaattgtagacatttagatgagcaatgtggtcaccaacatttccagtgtgaaaattcattcttgcatt |
24010579 |
T |
|
| Q |
101 |
gtctgcatgtacttgtttatctctcggacggtagaaaattgagtttccaacggaaagcatagcagcaatggagattatctcgtcagagcacttgtatttt |
200 |
Q |
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|||||||||||| | ||||| | |||| ||| || ||||| ||||| ||||||||||||||||||||||| ||||||||||| |||||||| ||| |
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| T |
24010578 |
gtctgcatgtacctttttattctttggactgtaaaatattgaaccgccaacagaaagcatagcagcaatggagatgatctcgtcagaacacttgtacttt |
24010479 |
T |
|
| Q |
201 |
tctgaagcaactatcatttttgacagcataggatcaagtgggaactctgccat |
253 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
24010478 |
tctgaagcaattatcatttttgacagcataggatcaagtgggaactctgccat |
24010426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 60 - 263
Target Start/End: Complemental strand, 7288406 - 7288203
Alignment:
| Q |
60 |
tggtcaccgacatctccagtgtgaaagttcattcttgcattgtctgcatgtacttgtttatctctcggacggtagaaaattgagtttccaacggaaagca |
159 |
Q |
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||||| || |||| |||||||||||| |||| ||||||||||||||||| ||||||||||| | |||||||| || ||||||||||||| ||||||| |
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| T |
7288406 |
tggtctccaacatttccagtgtgaaaattcagccttgcattgtctgcatgcacttgtttatcctttggacggtaaaatattgagtttccaatagaaagca |
7288307 |
T |
|
| Q |
160 |
tagcagcaatggagattatctcgtcagagcacttgtatttttctgaagcaactatcatttttgacagcataggatcaagtgggaactctgccatccgttt |
259 |
Q |
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||||||||||||| || || || || || |||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||| | |
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| T |
7288306 |
tagcagcaatggaaatgatgtcttctgaacacttgtatttttctgaaaccactatcatttttgacaacataggatcaagtgggaactctgccatccgtct |
7288207 |
T |
|
| Q |
260 |
acct |
263 |
Q |
| |
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|||| |
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|
| T |
7288206 |
acct |
7288203 |
T |
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