View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16174_low_3 (Length: 449)
Name: NF16174_low_3
Description: NF16174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16174_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 112 - 424
Target Start/End: Complemental strand, 34263991 - 34263679
Alignment:
| Q |
112 |
tcatgggatgtaatcatagaaaaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgtagcaatagcaatgttctttgatgcacaac |
211 |
Q |
| |
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|||||||||| ||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| | || ||||||||||||||||||| |
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| T |
34263991 |
tcatgggatgaaataatagaaaaaagtttatcaaattttggttggatggatttctttcaagctgttcttgtagcatttgctatgttctttgatgcacaac |
34263892 |
T |
|
| Q |
212 |
aatcattcataagcatttacactgataattacccaaaatggcactgcacaaacacaaacacaaattcatcatgttcttcatcctctgatatttgcaaact |
311 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
34263891 |
agtcattcataagcatttacactgataattacccaaaatggcactgcacaaacacaaacacaaattcatcatgtacttcgtcctctgatatttgcaaact |
34263792 |
T |
|
| Q |
312 |
cccaagatcctcttggtcttgggacacacactcttcaaacacaatcatttcttattggaatcttgaatgtgctagcacattcgtcataggtttaccacaa |
411 |
Q |
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|
| ||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
34263791 |
ctcaagatcttcttggtcttgggacacacacccttcaaacacaatcatttctcattggaatcttgaatgtgctagcacattcatcacaggtttaccacaa |
34263692 |
T |
|
| Q |
412 |
tcttctttcttca |
424 |
Q |
| |
|
||||||||||||| |
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|
| T |
34263691 |
tcttctttcttca |
34263679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 211 - 430
Target Start/End: Complemental strand, 35622810 - 35622591
Alignment:
| Q |
211 |
caatcattcataagcatttacactgataattacccaaaatggcactgcacaaacacaaacacaaattcatcatgttcttcatcctctgatatttgcaaac |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35622810 |
caatcattcataagcatttacactgataattacccaaaatggcactgcacaaacacaaacacaaattcatcatgttcttcatcctctgatatttgcaaac |
35622711 |
T |
|
| Q |
311 |
tcccaagatcctcttggtcttgggacacacactcttcaaacacaatcatttcttattggaatcttgaatgtgctagcacattcgtcataggtttaccaca |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35622710 |
tcccaagatcctcttggtcttgggacacacactcttcaaacacaatcatttcttattggaatcttgaatgtgctagcacattcgtcataggtttaccaca |
35622611 |
T |
|
| Q |
411 |
atcttctttcttcacaggct |
430 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
35622610 |
atcttctttcttcacaggct |
35622591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 35623209 - 35622991
Alignment:
| Q |
1 |
tttctataagaataattttattggcttttagtaatagcaatggaaggtccggtgcaaattgatgtacctgaatttcgttccaatattgagcaagaaaata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
35623209 |
tttctataagaataattttattggcttttagtaatagcaatggaaggtccggtgcaaattgatgtacctgaatctcgttccaatattgagcaagaaaata |
35623110 |
T |
|
| Q |
101 |
aaccaaggttatcatgggatgtaatcatagaaaaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgtagcaatagcaatgttctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35623109 |
aaccaaggttatcatgggatgtaatcatagaaaaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgtagcaatagcaatgttctt |
35623010 |
T |
|
| Q |
201 |
tgatgcacaacaatcattc |
219 |
Q |
| |
|
||||||||||||||||||| |
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| T |
35623009 |
tgatgcacaacaatcattc |
35622991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 33 - 422
Target Start/End: Original strand, 14542740 - 14543117
Alignment:
| Q |
33 |
aatagcaatggaaggtccggtgcaaattgatgtacctgaatttcgttccaatattgagcaagaaaataaaccaaggttatcatgggatgtaatcatagaa |
132 |
Q |
| |
|
|||||||||||||||| | || |||||| |||||||||||| || ||||||||||||||||||||| ||||||| || |||||||||||||| |||||| |
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|
| T |
14542740 |
aatagcaatggaaggttcagtacaaattaatgtacctgaatctcattccaatattgagcaagaaaagaaaccaattttgtcatgggatgtaattatagaa |
14542839 |
T |
|
| Q |
133 |
aaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgtagcaatagcaatgttctttgatgcacaacaatcattcataagcatttaca |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14542840 |
aaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgttgcagttgcaatgttctttgatgcacaacaatcattcataagcatttaca |
14542939 |
T |
|
| Q |
233 |
ctgataattacccaaaatggcactgcacaaacacaaacacaaattcatcatgttcttcatcctctgatatttgcaaactcccaagatcctcttggtcttg |
332 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
14542940 |
ctgataattacccaaaatggcactg------------cacaaattcaatatgcacttcatcctctgatatatgcaaactcccaagatcttcttggtcttg |
14543027 |
T |
|
| Q |
333 |
ggacacacactcttcaaacacaatcatttcttattggaatcttgaatgtgctagcacattcgtcataggtttaccacaatcttctttctt |
422 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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|
| T |
14543028 |
ggacacacatccttcaaacacaatcatttctcattggaatcttgaatgtgctagcacattcatcactggtttaccacaatcttctttctt |
14543117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 28 - 422
Target Start/End: Complemental strand, 14580852 - 14580470
Alignment:
| Q |
28 |
ttagtaatagcaatggaaggtccggtgcaaattgatgtacctgaatttcgttccaatattgagcaagaaaataaaccaaggttatcatgggatgtaatca |
127 |
Q |
| |
|
|||| |||||||||||||||| | || |||||| |||||| ||||| || ||||||||||||||||||||| ||||||| || |||||||||||||| | |
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|
| T |
14580852 |
ttagcaatagcaatggaaggttcagtacaaattaatgtacttgaatctcattccaatattgagcaagaaaagaaaccaattttgtcatgggatgtaatta |
14580753 |
T |
|
| Q |
128 |
tagaaaaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgtagcaatagcaatgttctttgatgcacaacaatcattcataagcat |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||| |
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|
| T |
14580752 |
tagaaaaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgttgcagttgcaatgttctttgatgcacaacaatcattcataagcat |
14580653 |
T |
|
| Q |
228 |
ttacactgataattacccaaaatggcactgcacaaacacaaacacaaattcatcatgttcttcatcctctgatatttgcaaactcccaagatcctcttgg |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
14580652 |
ttacactgataattacccaaaatggcactgca------------caaattcaatatgcacttcatcctctgatatatgcaaactcccaagatcttcttgg |
14580565 |
T |
|
| Q |
328 |
tcttgggacacacactcttcaaacacaatcatttcttattggaatcttgaatgtgctagcacattcgtcataggtttaccacaatcttctttctt |
422 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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|
| T |
14580564 |
tcttgggacacacatccttcaaacacaatcatttctcattggaatcttgaatgtgctagcacattcatcactggtttaccacaatcttctttctt |
14580470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 170; Significance: 4e-91; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 108 - 393
Target Start/End: Original strand, 37599763 - 37600048
Alignment:
| Q |
108 |
gttatcatgggatgtaatcatagaaaaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgtagcaatagcaatgttctttgatgca |
207 |
Q |
| |
|
|||||||||||||| ||| ||||||| ||||||||||||||| || |||||||| || |||||||||||||||||||| || ||||||||||||||| |
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|
| T |
37599763 |
gttatcatgggatgaaattatagaaatttttttatcaaattttggttgaatggatttatttcaagctgttcttgtagcaattgctatgttctttgatgca |
37599862 |
T |
|
| Q |
208 |
caacaatcattcataagcatttacactgataattacccaaaatggcactgcacaaacacaaacacaaattcatcatgttcttcatcctctgatatttgca |
307 |
Q |
| |
|
||| | ||||| ||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||| || |||||||||||||||||| |
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|
| T |
37599863 |
caagagtcatttataagcatttacactgataattacccaaaatggcattgcatagacacaaacacaaattcatcatgtactccatcctctgatatttgca |
37599962 |
T |
|
| Q |
308 |
aactcccaagatcctcttggtcttgggacacacactcttcaaacacaatcatttcttattggaatcttgaatgtgctagcacattc |
393 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||| || ||||||| |
|
|
| T |
37599963 |
aactctagagatcttcttggtcttgggacacacacccttcaaacacaatcatttctaactggaatcttgaatgtgttaacacattc |
37600048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 199 - 310
Target Start/End: Original strand, 37605482 - 37605591
Alignment:
| Q |
199 |
tttgatgcacaacaatcattcataagcatttacactgataattacccaaaatggcactgcacaaacacaaacacaaattcatcatgttcttcatcctctg |
298 |
Q |
| |
|
|||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||| |
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|
| T |
37605482 |
tttgatgcacaacaatcattcacaggcatttaccttgataattacccaaaatggcactgcacaaacac--acacaaattcatcatgcactccatcctctg |
37605579 |
T |
|
| Q |
299 |
atatttgcaaac |
310 |
Q |
| |
|
|||||||||||| |
|
|
| T |
37605580 |
atatttgcaaac |
37605591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 176 - 261
Target Start/End: Original strand, 10403887 - 10403972
Alignment:
| Q |
176 |
ttcttgtagcaatagcaatgttctttgatgcacaacaatcattcataagcatttacactgataattacccaaaatggcactgcaca |
261 |
Q |
| |
|
|||||||| || | ||||||||||| || ||||||||||||||||||| |||||||| || ||||||||| |||||| |||||| |
|
|
| T |
10403887 |
ttcttgtatcattcgcaatgttcttcgacgcacaacaatcattcataacaatttacaccgacgattacccaacatggcattgcaca |
10403972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 424
Target Start/End: Original strand, 10404054 - 10404126
Alignment:
| Q |
352 |
acaatcatttcttattggaatcttgaatgtgctagcacattcgtcataggtttaccacaatcttctttcttca |
424 |
Q |
| |
|
|||||||| ||| | |||| |||||||||||| || | ||| ||| |||||||||||||||||| ||||||| |
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|
| T |
10404054 |
acaatcatatctcaatggagtcttgaatgtgcaagtagcttcatcacaggtttaccacaatcttcattcttca |
10404126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 29678911 - 29678948
Alignment:
| Q |
1 |
tttctataagaataattttattggcttttagtaatagc |
38 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
29678911 |
tttctataagaataattttattggcttttagtagtagc |
29678948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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