View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16174_low_8 (Length: 249)
Name: NF16174_low_8
Description: NF16174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16174_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 30 - 226
Target Start/End: Original strand, 8143018 - 8143214
Alignment:
| Q |
30 |
atgaatgggatgcagggtacacagtacgatttggaataatttatgtggatttcgttaacaaattgaaaagatatcccaagtactctgctttttggctgca |
129 |
Q |
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| T |
8143018 |
atgaatgggatgcagggtacacagtacgatttggaataatttatgtggatttcgttaacaaattgaagagatatcccaagtactctgctttttggctgca |
8143117 |
T |
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| Q |
130 |
aaagttccttctcaagggaaaacactaaatttgatgttcatttggcatgtctaagattttccattgttgtttttcgaatttccagtgtcaccttagt |
226 |
Q |
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| T |
8143118 |
aaagttccttctcaagggaaaacactaaatttgatgttcatttggcatgtctaagattttccattgttgtttgtcgaatttccagtgtcaccttagt |
8143214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 30 - 226
Target Start/End: Original strand, 8167840 - 8168036
Alignment:
| Q |
30 |
atgaatgggatgcagggtacacagtacgatttggaataatttatgtggatttcgttaacaaattgaaaagatatcccaagtactctgctttttggctgca |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
8167840 |
atgaatgggatgcagggtacacagtacgatttggaataatttatgtcgatttcgttaacaatttgaagagatatcccaagtactctgctttttggctgca |
8167939 |
T |
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| Q |
130 |
aaagttccttctcaagggaaaacactaaatttgatgttcatttggcatgtctaagattttccattgttgtttttcgaatttccagtgtcaccttagt |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
8167940 |
aaagttccttctcaagggaaaacactaaatttgatgttcatttggcatgtctaagattttccattgttgtttgtcgaatttccaatgtcaccttagt |
8168036 |
T |
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