View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16175_low_1 (Length: 518)
Name: NF16175_low_1
Description: NF16175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16175_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 447; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Original strand, 49700141 - 49700599
Alignment:
| Q |
1 |
taggttctatatttggtatttcatttctttctatgatgttaattaatatttggatattttctttttggatttgtgatatatcagaggtacacagtacaag |
100 |
Q |
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| T |
49700141 |
taggttctatatttggtatttcatttctttctatgatgttaattaatatttggatattttctttttggatttgtgatatatcagaggtacacagtacaag |
49700240 |
T |
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| Q |
101 |
ctgccgcaaattttgcccgccggaataagatacctatccacttggaagaacagatgctttctcatttgttcatgaagtaccgaaccgatttggaaggagt |
200 |
Q |
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| T |
49700241 |
ctgccgcaaattttgcccgccggaataagatacctatccacttggaagaacagatgctttctcatttgttcatgaagtaccgaaccgatttggaaggagt |
49700340 |
T |
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| Q |
201 |
gcagcaacaagagattattgattcccttccaaaagctattcgatctagtatctcatactacttattcttttcaatgatggacaacgtatacttgtttaag |
300 |
Q |
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| T |
49700341 |
gcagcaacaagagattattgattcccttccaaaagctattcaatctagtatctcatactacttattcttttcaatgatggacaacgtatacttgtttaag |
49700440 |
T |
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| Q |
301 |
ggagtgtcaaaagacctaatttttcaattggtaatattttctttttggttatcctttgatttgatttgacaaaaactgagatcgtatgtgataaaactta |
400 |
Q |
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| T |
49700441 |
ggagtgtcaaaagacctaatttttcaattggtaatattttctttttggttatcctttgatttgatttgacaaaaactgagatcgtatgtgataaaacttt |
49700540 |
T |
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| Q |
401 |
ggtctgtgatcagtgagcatctttcggtatttggtaatcaataagtctcactagagagc |
459 |
Q |
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| T |
49700541 |
ggtctgtgatcagtgagcatctttcggtatttggtaatcaataagtttcactagagagc |
49700599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 476 - 504
Target Start/End: Original strand, 49700616 - 49700644
Alignment:
| Q |
476 |
tgagacagactctttcttcacatgtttat |
504 |
Q |
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| T |
49700616 |
tgagacagactctttcttcacatgtttat |
49700644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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