View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16175_low_3 (Length: 367)
Name: NF16175_low_3
Description: NF16175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16175_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 12 - 349
Target Start/End: Complemental strand, 49700164 - 49699827
Alignment:
| Q |
12 |
atgaaataccaaatatagaacctatcaccgcaattaagtgcatagttttctcagacctgtaatacaaagtaggagttcctgcaaagataaagttaggaag |
111 |
Q |
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| T |
49700164 |
atgaaataccaaatatagaacctatcaccgcaattaagtgcatagttttctcagacctgtaatacaaagtaggagttcctgcaaagataaagttaggaag |
49700065 |
T |
|
| Q |
112 |
gtttaaaaaagattgtactcacatattgcctagttctgcttgtggcatgaacagctaaatttgtcatgtttccaatgatgtatgcagtaagtccctgatt |
211 |
Q |
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| T |
49700064 |
gtttaaaaaagattgtactcacatattgcctagttctgcttgtggcatgaacagctagatttgtcatgtttccaatgatgtatgcagtaagtccctgatt |
49699965 |
T |
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| Q |
212 |
aaagagtatatagaaaatgtcaaatagcatctcccttgtatttacaggatgcagatcaccataaccaactgctgaaacagtgataatggaccagtatact |
311 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
49699964 |
aaagagtataaagaaaatgtcaaatagcatctcccttgtatttacaggatgcagatcaccataaccaactgttgaaacagtgataatggaccagtatact |
49699865 |
T |
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| Q |
312 |
gatgctacgtagagagacatcgtattcttcttgtcaac |
349 |
Q |
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| T |
49699864 |
gatgctacgtagagagacatcgtattcttcttgtcaac |
49699827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 288
Target Start/End: Original strand, 2243335 - 2243404
Alignment:
| Q |
219 |
atatagaaaatgtcaaatagcatctcccttgtatttacaggatgcagatcaccataaccaactgctgaaa |
288 |
Q |
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| T |
2243335 |
atataaaaaatgtcaaatatcatttcatctgtgtttacaggatgcaaatctccataaccaactgttgaaa |
2243404 |
T |
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