View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16175_low_5 (Length: 271)
Name: NF16175_low_5
Description: NF16175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16175_low_5 |
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| [»] scaffold0565 (1 HSPs) |
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Alignment Details
Target: scaffold0565 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: scaffold0565
Description:
Target: scaffold0565; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 18 - 174
Target Start/End: Complemental strand, 4817 - 4661
Alignment:
| Q |
18 |
tgtctaacctttaatggaaatttaacagctgagcaattggggttcaatggttacataccttcgtatgcatcagctagaggccgacaaatactcagaggag |
117 |
Q |
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| T |
4817 |
tgtctaacctttaatggaaatttaacagctgagcaattggggttcaatggttacataccttcgtatgcatcagctagaggccgacaaatactcagaggag |
4718 |
T |
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| Q |
118 |
tcaattatgcttcagcagctgctggaatcagagaagaaacaggacaacaattggtac |
174 |
Q |
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| T |
4717 |
tcaattatgcttcagcagctgctggaatcagagaagaaacaggacaacaattggtac |
4661 |
T |
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Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 193 - 253
Target Start/End: Complemental strand, 42840191 - 42840131
Alignment:
| Q |
193 |
gcttcctatgcatgcacatatgcaacatattaacaaatgaaggtttaatatatgcattaag |
253 |
Q |
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| T |
42840191 |
gcttcctatgcatgcacatatgcaacatattaacaaatgaaggtttaatatatgcattaag |
42840131 |
T |
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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 34 - 167
Target Start/End: Original strand, 7614046 - 7614179
Alignment:
| Q |
34 |
gaaatttaacagctgagcaattggggttcaatggttacataccttcgtatgcatcagctagaggccgacaaatactcagaggagtcaattatgcttcagc |
133 |
Q |
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| T |
7614046 |
gaaatttgacagctgagctattgggatttgagggctacatatctccctattcaacagccagagaccaagaaatactccaaggagtcaattatgcttctgc |
7614145 |
T |
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| Q |
134 |
agctgctggaatcagagaagaaacaggacaacaa |
167 |
Q |
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| T |
7614146 |
tgctgctggaattagagaagaaactggacaacaa |
7614179 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 162
Target Start/End: Complemental strand, 36362562 - 36362505
Alignment:
| Q |
105 |
atactcagaggagtcaattatgcttcagcagctgctggaatcagagaagaaacaggac |
162 |
Q |
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| T |
36362562 |
atactcaaaggagtcaattatgcttctgcagcagctggaattagagaggaaactggac |
36362505 |
T |
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