View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16176_high_14 (Length: 341)
Name: NF16176_high_14
Description: NF16176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16176_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 22782674 - 22782370
Alignment:
| Q |
1 |
caaataagaacaagagaaggacttctcatgcatcatttttgttgcctcaagatgatgttgaagttgagccatttcatcatatgatagatgctcaacatcc |
100 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22782674 |
caaataagaacaagagaaggacttctaatgcatcatttttgttgcctcaagatgatgttgaagttgagccatttcatcatatgatagatgctcaacatcc |
22782575 |
T |
|
| Q |
101 |
caagatgtaccagaaagtcaagtttggagattatttgaggcattccttgaagagaaaaatggagggaaaaacacacactgatgttgcaaggataaaggaa |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22782574 |
caagatgtaccagaaagtcaagtttggagattatttgaggcattccttgaagagaaaaatggagggaaaaacacacactgatgttgcaaggataaaggaa |
22782475 |
T |
|
| Q |
201 |
caagtaatagagaaataaaaaatcaaagaaaatgcccagtttgagaaaatgaggaaagtgatggagattatgtggttttctccttttaataatgcatatt |
300 |
Q |
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||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
22782474 |
caagtaatagagaaataaaaaataaaagaaaatggacagtttgagaaaatgaggaaagggatggagattatgtggttttctccttttaataatgcatatt |
22782375 |
T |
|
| Q |
301 |
ttctg |
305 |
Q |
| |
|
||||| |
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|
| T |
22782374 |
ttctg |
22782370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 22778550 - 22778317
Alignment:
| Q |
1 |
caaataagaacaagagaaggacttctcatgcatcatttttgttgcctcaagatgatgttgaagttgagccatttcatcatatgatagatgctcaacatcc |
100 |
Q |
| |
|
||||| ||||||| ||||||| |||| ||||||||||||| || |||| |||||| |||||||||||||| ||| |||||||||||||||||||| | || |
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| T |
22778550 |
caaatcagaacaaaagaaggatttcttatgcatcatttttattccctcgagatgacgttgaagttgagccctttgatcatatgatagatgctcaaaaccc |
22778451 |
T |
|
| Q |
101 |
caagatgtaccagaaagtcaagtttggagattatttgaggcattccttgaagagaaaaatggagggaaaaacacacactgatgttgcaaggataaaggaa |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| |||| |||||||||| |
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| T |
22778450 |
caagatgtaccagaaagtcaagtatggagattatttgaggcattccttaaagagaaaaatggagcgaaaaacacacaccgatgtggcaaagataaaggaa |
22778351 |
T |
|
| Q |
201 |
caagtaatagagaaataaaaaatcaaagaaaatg |
234 |
Q |
| |
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|| ||||||| || |||| || |||||||||||| |
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| T |
22778350 |
catgtaatagtgacataacaactcaaagaaaatg |
22778317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 22775171 - 22774961
Alignment:
| Q |
1 |
caaataagaacaagagaaggacttctcatgcatcatttttgttgcctcaagatgatgttgaagttgagccatttcatcatatgatagatgctcaacatcc |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||| |||| |||| ||||||||||||||| ||||| ||| |||||||||||||||||||| | || |
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|
| T |
22775171 |
caaataaaaacaagagaaggacttctcatgcaacatttgtgtttcctcgagatgatgttgaagtggagccctttgatcatatgatagatgctcaaaaccc |
22775072 |
T |
|
| Q |
101 |
caagatgtaccagaaagtcaagtttggagattatttgaggcattccttgaagagaaaaatggagggaaaaacacacactgatgttgcaaggataaaggaa |
200 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||| |||||||| | |
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|
| T |
22775071 |
taagatgtaccagaaagtgttgtatggagattatttgaggcaatccatgaagagaaaaatggagggaaaaacacacactgatgtggcaaagataaaggca |
22774972 |
T |
|
| Q |
201 |
caagtaataga |
211 |
Q |
| |
|
|||||||||| |
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|
| T |
22774971 |
taagtaataga |
22774961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 22765351 - 22765140
Alignment:
| Q |
1 |
caaataagaacaagagaaggacttctcatgcatcatttttgttgcctcaagatgatgttgaagttgagccatttcatcatatgatagatgctcaacatcc |
100 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||| | |||| ||||||||||||| ||||||||||| ||||||||||||||||| || | | |
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|
| T |
22765351 |
caaataagaacaaaagaaggacttcccatgcatcatttttgatccctcgagatgatgttgaaattgagccatttgatcatatgatagatgctgaaaacac |
22765252 |
T |
|
| Q |
101 |
caagatgtaccagaaagtcaagtttggagattatttgaggcattccttgaagagaaaaatggagggaaaaacacacactgatgttgcaaggataaaggaa |
200 |
Q |
| |
|
||| || ||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||| | |||||| || | |||||||||| |
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|
| T |
22765251 |
caaaatttaccagaaagtcaagtttggagattatttaaggcaatccatgaagagaaaaatggagggaaaaacacatattgatgtggccaagataaaggaa |
22765152 |
T |
|
| Q |
201 |
caagtaatagag |
212 |
Q |
| |
|
|| |||||||| |
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|
| T |
22765151 |
cagttaatagag |
22765140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 16085071 - 16085328
Alignment:
| Q |
1 |
caaataagaacaagagaaggacttctcatgcatcatttttgttgcctcaagatgatgttgaagttgagccatttcatcatatgatagatgctcaacatcc |
100 |
Q |
| |
|
||||||||||||||| ||||| ||| ||||| ||||| |||| |||| ||| ||||||||||||||||| ||| | ||||||||| ||||| || | || |
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|
| T |
16085071 |
caaataagaacaagaaaaggatgtcttatgcaacatttgtgttccctcgagaagatgttgaagttgagccctttgaccatatgataaatgctgaaaaccc |
16085170 |
T |
|
| Q |
101 |
caagatgtaccagaaagtcaagtttggagattatttgaggcattcc-ttgaagagaaaaatggagggaaaaacacacactgatgttgcaaggataaagga |
199 |
Q |
| |
|
||| |||||||||||||||| || |||||||||||||||| | ||| ||||| |||| | ||||||||||||| |||||||| | ||||||| |||||| |
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|
| T |
16085171 |
caaaatgtaccagaaagtcaggtatggagattatttgagggaatcctttgaaaagaatataggagggaaaaacaaacactgatatggcaaggagaaagga |
16085270 |
T |
|
| Q |
200 |
acaagtaatagagaaataaaaaatcaaagaaaatgcccagtttgagaaaatgaggaaag |
258 |
Q |
| |
|
| | |||||||| ||||| |||| ||||||| | |||||||||||| | |||||||| |
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|
| T |
16085271 |
atatgtaatagaagaataacaaatttaagaaaa-gaccagtttgagaatacgaggaaag |
16085328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 23278399 - 23278573
Alignment:
| Q |
1 |
caaataagaacaagagaaggacttctcatgcatcatttttgttgcctcaagatgatgttgaagttgagccatttcatcatatgatagatgctcaacatcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||| || | ||||||| |||| ||| ||| ||| ||||||||||||||| |||| |||| |
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|
| T |
23278399 |
caaataagaacaagagaaggacttcttttgtatcatttttgttcccccgggatgatgctgaacttgggccctttgatcatatgatagatgatcaaaatcc |
23278498 |
T |
|
| Q |
101 |
caagatgtaccagaaagtcaagtttggagattatttgaggcattccttgaagagaaaaatggagggaaaaacaca |
175 |
Q |
| |
|
|||||||||| || || ||| | |||||| ||||||||||| ||||||| || ||| |||| ||||||||||| |
|
|
| T |
23278499 |
caagatgtacaaggaaatcacttatggagagtatttgaggcacaccttgaataggaaattggaaggaaaaacaca |
23278573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 22770372 - 22770263
Alignment:
| Q |
1 |
caaataagaacaagagaaggacttctcatgcatcatttttgttgcctcaagatgatgttgaagttgagccatttcatcatatgatagatgctcaacatcc |
100 |
Q |
| |
|
||||||||||||||| ||||||| || | ||||| |||||| ||||| | ||||| |||| | | | |||| ||||||||||||||| |||| |||| |
|
|
| T |
22770372 |
caaataagaacaagaaaaggactacttttatatcatatttgttccctcagggtgatgctgaaatcggggcattagatcatatgatagatgatcaaaatcc |
22770273 |
T |
|
| Q |
101 |
caagatgtac |
110 |
Q |
| |
|
|||||||||| |
|
|
| T |
22770272 |
caagatgtac |
22770263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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