View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16176_high_18 (Length: 244)
Name: NF16176_high_18
Description: NF16176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16176_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 29198963 - 29198808
Alignment:
| Q |
1 |
taattaagcctattagttattactaattgtttgcgtgaacgaatgagtcttaaatcttgtgcctccaaattggtattggtccaatcaaatattttaccta |
100 |
Q |
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| T |
29198963 |
taattaagcctattagttattactaattgtttgcgtgaacgaatgagtcttaaatcttgtgcctctaaattggtattggtccaatcaaatattttaccta |
29198864 |
T |
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| Q |
101 |
gtcttttggtgattccaaaagttatatactcctatgtcccttcaaatatgtatgcg |
156 |
Q |
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| T |
29198863 |
gtcttttggtgattccaaaagttatatactcctatgtcccttcaaatatgtatgcg |
29198808 |
T |
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Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 29 - 127
Target Start/End: Original strand, 12653003 - 12653099
Alignment:
| Q |
29 |
gtttgcgtgaacgaatgagtcttaaatcttgtgcctccaaattggtattggtccaatcaaatattttacctagtcttttggtgattccaaaagttatat |
127 |
Q |
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| T |
12653003 |
gtttgggtgaacgaatg--tcttaaatcttgtgcctccaaattagtattggtccaatcaaatattttacctactcttttggtgattccgaaagttatat |
12653099 |
T |
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