View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16176_low_1 (Length: 594)
Name: NF16176_low_1
Description: NF16176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16176_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 147; Significance: 3e-77; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 203 - 349
Target Start/End: Original strand, 33061405 - 33061551
Alignment:
| Q |
203 |
tttctcaacaacaaaggatggagagaaaaatatgatgttagtttttactaaaaaagatcatgttatgtttctaatattattcattcataaaaatgttttt |
302 |
Q |
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| T |
33061405 |
tttctcaacaacaaaggatggagagaaaaatatgatgttagtttttactaaaaaagatcatgttatgtttctaatattattcattcataaaaatgttttt |
33061504 |
T |
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| Q |
303 |
aagattacaaagttatattgaatttttccccacgtagaaagatcatc |
349 |
Q |
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| T |
33061505 |
aagattacaaagttatattgaatttttccccacgtagaaagatcatc |
33061551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 16 - 135
Target Start/End: Original strand, 33061218 - 33061337
Alignment:
| Q |
16 |
tcacatctcacacatcaaatgctcactcacacctcccaatctctctggaactagggacagacctacatcaatgactatgggggcaagaatttacattttt |
115 |
Q |
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| T |
33061218 |
tcacatatcacacatcaaatgctcactcacacctcccaatctctctggaactagggacagacctacatcaatgactatggggacaagaatttacattttt |
33061317 |
T |
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| Q |
116 |
gtttagtcaaagaacttgtg |
135 |
Q |
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| T |
33061318 |
gtttagtcaaagaacttgtg |
33061337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 413 - 441
Target Start/End: Original strand, 33061615 - 33061643
Alignment:
| Q |
413 |
gctgaaaaacatcattagataatagatat |
441 |
Q |
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| T |
33061615 |
gctgaaaaacatcattagataatagatat |
33061643 |
T |
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