View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16176_low_13 (Length: 349)
Name: NF16176_low_13
Description: NF16176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16176_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 19 - 342
Target Start/End: Complemental strand, 2758439 - 2758116
Alignment:
| Q |
19 |
gattggcagctgaaaatcataaggtcgaaccggaggaaccttgtaagttttgcaggcgcggcgcgggatcatgcggatgatcacataaggtcgatattaa |
118 |
Q |
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| T |
2758439 |
gattggcagctgaaaatcataaggtcgaaccggaggaaccttgtaagttttgcaggcgcagcgcgggatcatgcggatgatcacataaggtcgatattaa |
2758340 |
T |
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| Q |
119 |
tcgaccaatgcagttccaaaagtgacggtaaatgcaagtttctgaattgtagttctgctaaatgtaatgagccagaatcaattatagaactttttgtgga |
218 |
Q |
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|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2758339 |
tcaaccaatgcagttccgaaagtgacggtaaatgcaagtttctgaattgtagttctgctaaatgtaatgagccagaatcaattatagaactttttgtgga |
2758240 |
T |
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| Q |
219 |
atctgagttttgcttgcagccaccgggagatagtccaacgagaaaatcggtgtttgattcactaatatcgggatgtattcctgttcttttcgatcctttc |
318 |
Q |
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| T |
2758239 |
atctgagttttgcttgcagccaccgggagatagtccaacgagaaaatcggtgtttgattcactaatatcgggatgtattcctgttcttttcgatcctttc |
2758140 |
T |
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| Q |
319 |
acggcttattatcaatattcttgg |
342 |
Q |
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| T |
2758139 |
acggcttattatcaatatgcttgg |
2758116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 342
Target Start/End: Complemental strand, 2754478 - 2754155
Alignment:
| Q |
19 |
gattggcagctgaaaatcataaggtcgaaccggaggaaccttgtaagttttgcaggcgcggcgcgggatcatgcggatgatcacataaggtcgatattaa |
118 |
Q |
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||||||||||||||||||||||| ||||| |||| |||||||||||||||||| || |||||| ||||| |||||||||| || |||||||||||||| | |
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| T |
2754478 |
gattggcagctgaaaatcataagatcgaatcggaagaaccttgtaagttttgccggagcggcgagggatgatgcggatgaccatataaggtcgatattga |
2754379 |
T |
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| Q |
119 |
tcgaccaatgcagttccaaaagtgacggtaaatgcaagtttctgaattgtagttctgctaaatgtaatgagccagaatcaattatagaactttttgtgga |
218 |
Q |
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|| ||||||||||||| |||||||| ||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||| |||||||||||||| |
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| T |
2754378 |
tcaaccaatgcagttcgaaaagtgaaggtaaatgcaagtttctaaattgtagttctgttaaatgttctgagccagaatcaattatggaactttttgtgga |
2754279 |
T |
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| Q |
219 |
atctgagttttgcttgcagccaccgggagatagtccaacgagaaaatcggtgtttgattcactaatatcgggatgtattcctgttcttttcgatcctttc |
318 |
Q |
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||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| |||||||||||||||||| |
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| T |
2754278 |
gtctgagttttgtttacagccaccgggagatagtccaacgagaaaatcggtttttgattcgctgatatcgggatgtattccggttcttttcgatcctttc |
2754179 |
T |
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| Q |
319 |
acggcttattatcaatattcttgg |
342 |
Q |
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|||||||||||||||||| ||||| |
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| T |
2754178 |
acggcttattatcaatatgcttgg |
2754155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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