View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16176_low_14 (Length: 349)
Name: NF16176_low_14
Description: NF16176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16176_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 43616306 - 43615967
Alignment:
| Q |
1 |
taatgcatcgaaacttatccatttacttggagagtcaacctttactgtaagtgatgagttaatctttcgtttttagaaaatactcaatatttttacatca |
100 |
Q |
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| T |
43616306 |
taatgcatcgaaacttatccatttacttggagagtcaacctttactgtaagtgatgagttaatctttcgtttttagaaaatactcaatatttttacatca |
43616207 |
T |
|
| Q |
101 |
attcttaaagcatgaagttgtacggttattcctgtctcactttaggcttgtttgattattatgtgctggctgatgcacaatttctgtgtatttaggttga |
200 |
Q |
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| T |
43616206 |
attcttaaagcatgaagttgtacggttattcctgtctcactttaggcttgtttgattattatgtgctggctgatgcacaatttctgtgtatttaggttga |
43616107 |
T |
|
| Q |
201 |
acaaagaagacttgcactttatgctgctttgtttctgccactcagaaataacacttataaaaagaaggccaagaaggtacacacctcctttttctattta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43616106 |
acaaagaagacttgcactttatgctgctttgtttctgccactcagaaataacacttataaaaagaaggccaagaaggtacacacctcctttttttattta |
43616007 |
T |
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| Q |
301 |
tataggtgcaattttaaagtgcaagtgcattaagtataat |
340 |
Q |
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||||||||||||||||||||||| |||||||||||||||| |
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| T |
43616006 |
tataggtgcaattttaaagtgcaggtgcattaagtataat |
43615967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 43647550 - 43647252
Alignment:
| Q |
1 |
taatgcatcgaaacttatccatttacttggagagtcaacctttactgtaagtgatgagttaatctttcgtttttagaaaatactcaatatttttacatca |
100 |
Q |
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||||||||| || |||||||||||||||||||||||||||||||| |||||| | ||||||| ||||| |||||| ||||||||| | ||||||||||| |
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| T |
43647550 |
taatgcatcaaaccttatccatttacttggagagtcaacctttacagtaagtaacgagttaagctttcatttttactaaatactcatt-tttttacatca |
43647452 |
T |
|
| Q |
101 |
attcttaaagcatgaagttgtacggttattcctgtctcactttaggcttgtttgattattatgtgctggctgatgcacaatttctgtgtatttaggttga |
200 |
Q |
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|||||||||| | || |||||||||| |||||| |||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||| |
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| T |
43647451 |
attcttaaagtacaaaattgtacggttgttcctgcgccactataggcttgtttgattattatgtgctggctgatacacaatttatgtgtatttaggctga |
43647352 |
T |
|
| Q |
201 |
acaaagaagacttgcactttatgctgctttgtttctgccactcagaaataacacttata---aaaagaaggccaagaaggtacacacctcctttttctat |
297 |
Q |
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|||||||||||| |||| ||||||||||||||||| ||||||||||||| |||||||| | |||||||| ||||||||||||| ||| ||||||||| |
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| T |
43647351 |
acaaagaagactctcactctatgctgctttgtttcttccactcagaaataccacttatagtgagaagaaggctaagaaggtacacaactcatttttctat |
43647252 |
T |
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